Pre_GI: BLASTP Hits

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Query: NC_012660:5571500:5572507 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 5572507, End: 5574378, Length: 1872

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:5723787:5723787572378757256551869Pseudomonas fluorescens Pf-5, complete genomeprotein export protein SecD01113
NC_007492:5214709:5217219521721952190901872Pseudomonas fluorescens PfO-1, complete genomeprotein export protein SecD01110
NC_015379:1151143:1176438117643811783061869Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative Sec protein secretion system, subunit SecD01097
NC_016830:1182765:1206052120605212079201869Pseudomonas fluorescens F113 chromosome, complete genomeprotein SecD01093
NC_020829:4246847:4246847424684742487091863Pseudomonas denitrificans ATCC 13867, complete genomepreprotein translocase subunit SecD0980
NC_015581:1133775:1134831113483111367141884Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeprotein-export membrane protein SecD5e-142504
NC_018012:3401854:3420097342009734219531857Thiocystis violascens DSM 198 chromosome, complete genomeprotein-export membrane protein, SecD/SecF family4e-139495
NC_018697:1343756:1344695134469513465541860Cycloclasticus sp. P1 chromosome, complete genomePreprotein translocase subunit SecD3e-138492
NC_008789:1837493:1852345185234518542011857Halorhodospira halophila SL1, complete genomeprotein-export membrane protein SecD2e-133476
NC_009465:938378:9392899392899411361848Candidatus Vesicomyosocius okutanii HA, complete genomepreprotein translocase SecD subunit1e-127457
NC_008610:1068429:1072310107231010741571848Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),protein-export membrane protein SecD1e-125451
NC_007614:2764848:2764848276484827666921845Nitrosospira multiformis ATCC 25196 chromosome 1, completeprotein-export membrane protein SecD1e-125450
NC_007508:3034718:3049133304913330509771845Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeprotein export protein SecD1e-124447
NC_017271:2789667:2805274280527428071421869Xanthomonas campestris pv. raphani 756C chromosome, completeprotein-export membrane protein SecD3e-124446
NC_017515:1653306:1653306165330616551591854Neisseria meningitidis M04-240196 chromosome, complete genomeprotein-export membrane protein SecD4e-123442
NC_008601:1151653:1156041115604111579781938Francisella tularensis subsp. novicida U112, complete genomepreprotein translocase, subunit D, membrane protein3e-109395
NC_015637:891842:9100299100299118671839Vibrio anguillarum 775 chromosome chromosome II, complete sequenceSecD5e-99362
NC_012667:703852:7266287266287284661839Vibrio cholerae MJ-1236 chromosome 2, complete genomepreprotein translocase subunit SecD2e-96353
NC_020299:127480:1274801274801293571878Candidatus Kinetoplastibacterium oncopeltii TCC290E, completepreprotein translocase subunit SecD4e-92339
NC_020409:512861:5288925288925304871596Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeProtein-export membrane protein secD1e-72275
NC_014355:3248386:3252569325256932542181650Candidatus Nitrospira defluvii, complete genomeprotein-export membrane protein SecD3e-72273
NC_011146:603429:6096866096866112901605Geobacter bemidjiensis Bem, complete genomeprotein-export membrane protein SecD1e-70268
NC_008686:1383891:1383891138389113855551665Paracoccus denitrificans PD1222 chromosome 1, complete sequenceprotein-export membrane protein SecD4e-67256
NC_006833:1011537:1044453104445310459341482Wolbachia endosymbiont strain TRS of Brugia malayi, completePreprotein translocase subunit SecD1e-65251
NC_013009:562470:5632975632975648051509Neorickettsia risticii str. Illinois, complete genomeprotein-export membrane protein SecD2e-58227
NC_007798:547800:5486275486275501351509Neorickettsia sennetsu str. Miyayama, complete genomeprotein-export membrane protein SecD1e-57224
NC_016024:156000:1560731560731577611689Candidatus Chloracidobacterium thermophilum B chromosome chromosomeprotein-export membrane protein SecD8e-55215
NC_013517:2909798:2915797291579729170171221Sebaldella termitidis ATCC 33386, complete genomeprotein-export membrane protein SecD5e-52206
NC_013192:1941002:1948491194849119497051215Leptotrichia buccalis DSM 1135, complete genomeprotein-export membrane protein SecD2e-51204
NC_014632:402500:4129394129394141591221Ilyobacter polytropus DSM 2926 chromosome, complete genomeprotein-export membrane protein SecD2e-51204
NC_013520:718732:7187327187327200061275Veillonella parvula DSM 2008, complete genomeprotein-export membrane protein SecD3e-51203
NC_010546:4786000:4802737480273748041491413Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceprotein export membrane protein4e-51203
NC_003454:1346500:1357191135719113584261236Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeProtein translocase subunit secD4e-48193
NC_013501:1691532:1696041169604116979091869Rhodothermus marinus DSM 4252, complete genomeprotein-export membrane protein SecD4e-48193
NC_005071:671084:6710846710846725711488Prochlorococcus marinus str. MIT 9313, complete genomepreprotein translocase subunit7e-47189
NC_012225:1575432:1589773158977315912841512Brachyspira hyodysenteriae WA1, complete genomepreprotein translocase subunit SecD3e-46187
NC_015500:987641:1013317101331710150531737Treponema brennaborense DSM 12168 chromosome, complete genomeprotein-export membrane protein SecD6e-46186
NC_017243:517684:5201165201165216271512Brachyspira intermedia PWS/A chromosome, complete genomepreprotein translocase subunit SecD7e-46186
NC_018664:1795223:1816547181654718177941248Clostridium acidurici 9a chromosome, complete genomeprotein-export membrane protein SecD7e-45182
NC_011059:1:1338113381151651785Prosthecochloris aestuarii DSM 271, complete genomeprotein-export membrane protein SecD7e-44179
NC_009455:273519:3208253208253221741350Dehalococcoides sp. BAV1 chromosome, complete genomepreprotein translocase subunit SecD3e-43176
NC_010571:4483500:4505305450530545078542550Opitutus terrae PB90-1, complete genomeprotein-export membrane protein SecD1e-42174
NC_020054:2066510:2069969206996920730853117Fibrella aestuarina BUZ 2 drat genomeprotein-export membrane protein SecD9e-39162
NC_017192:497950:5163865163865179511566Arcobacter sp. L, complete genomeprotein-export membrane protein SecD2e-36154
NC_014328:3682000:3688288368828836895621275Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative protein-export membrane protein6e-36152
NC_010382:3783879:3801685380168538039102226Lysinibacillus sphaericus C3-41, complete genomeprotein-export membrane protein2e-34147
NC_014041:4093190:4093190409319040961802991Zunongwangia profunda SM-A87 chromosome, complete genomebifunctional preprotein translocase subunit SecD/SecF2e-32140
NC_013062:627000:6720266720266749412916Flavobacteriaceae bacterium 3519-10, complete genomeProtein-export membrane protein secD/ Protein-export membrane protein secF2e-31138
NC_006156:685344:6928986928986945681671Borrelia garinii PBi chromosome linear, complete sequenceprotein export protein SecD2e-31137
NC_015496:2155816:2172082217208221750632982Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeprotein-export membrane protein SecD5e-31136
NC_011725:4373721:4390032439003243922962265Bacillus cereus B4264 chromosome, complete genomebifunctional preprotein translocase subunit SecD/SecF1e-29131
NC_004722:4333643:4346797434679743490612265Bacillus cereus ATCC 14579, complete genomeProtein translocase subunit SecD / Protein translocase subunit SecF2e-29131
NC_007333:430000:4310844310844338192736Thermobifida fusca YX, complete genomeSecD/SecF/SecDF export membrane protein2e-25117
NC_013174:1459730:1463867146386714657291863Jonesia denitrificans DSM 20603, complete genomeprotein-export membrane protein SecD5e-1479.7
NC_016932:1246235:1269149126914912710171869Corynebacterium pseudotuberculosis 316 chromosome, complete genomeprotein-export membrane protein secD5e-1376.6
NC_014329:1261480:1284410128441012862781869Corynebacterium pseudotuberculosis FRC41 chromosome, completeprotein-export membrane protein5e-1376.6
NC_016781:1261300:1284230128423012860981869Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeprotein-export membrane protein secD5e-1376.6
NC_017031:1261289:1284219128421912860871869Corynebacterium pseudotuberculosis P54B96 chromosome, completeProtein-export membrane protein secD5e-1376.6
NC_017300:1258861:1281792128179212836601869Corynebacterium pseudotuberculosis 1002 chromosome, completeProtein-export membrane protein secD5e-1376.6
NC_017301:1261167:1284098128409812859661869Corynebacterium pseudotuberculosis C231 chromosome, completeProtein-export membrane protein secD5e-1376.6
NC_017303:1261311:1284241128424112861091869Corynebacterium pseudotuberculosis I19 chromosome, complete genomeProtein-export membrane protein secD5e-1376.6
NC_017305:1258840:1281770128177012836381869Corynebacterium pseudotuberculosis PAT10 chromosome, completeProtein-export membrane protein secD5e-1376.6
NC_016787:1350676:1358037135803713598301794Corynebacterium diphtheriae HC03 chromosome, complete genomepreprotein translocase subunit SecD1e-1172.4
NC_016790:1319060:1334105133410513358981794Corynebacterium diphtheriae VA01 chromosome, complete genomepreprotein translocase subunit SecD1e-1172.4
NC_016788:1349500:1361555136155513633331779Corynebacterium diphtheriae HC04 chromosome, complete genomepreprotein translocase subunit SecD1e-1171.6
NC_016799:1343020:1418296141829614200741779Corynebacterium diphtheriae 31A chromosome, complete genomepreprotein translocase subunit SecD2e-1171.6
NC_016785:1321700:1344457134445713462351779Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomepreprotein translocase subunit SecD2e-1171.6
NC_016783:1374464:1387153138715313889311779Corynebacterium diphtheriae INCA 402 chromosome, complete genomepreprotein translocase subunit SecD2e-1171.6
NC_016800:1378728:1391437139143713932151779Corynebacterium diphtheriae BH8 chromosome, complete genomepreprotein translocase subunit SecD2e-1171.2
NC_016802:1317365:1363765136376513655431779Corynebacterium diphtheriae HC02 chromosome, complete genomepreprotein translocase subunit SecD2e-1171.2
NC_016801:1361597:1407973140797314097511779Corynebacterium diphtheriae C7 (beta) chromosome, complete genomepreprotein translocase subunit SecD3e-1170.9
NC_016789:1334514:1408653140865314104311779Corynebacterium diphtheriae PW8 chromosome, complete genomepreprotein translocase subunit SecD3e-1170.9
NC_002935:1378566:1390632139063213924101779Corynebacterium diphtheriae NCTC 13129, complete genomeprotein export protein SecD5e-1170.1
NC_016782:1359000:1364975136497513667531779Corynebacterium diphtheriae 241 chromosome, complete genomepreprotein translocase subunit SecD9e-1169.3
NC_016786:1359064:1364945136494513667231779Corynebacterium diphtheriae HC01 chromosome, complete genomepreprotein translocase subunit SecD9e-1169.3
NC_015722:1050023:105002310500231050934912Candidatus Midichloria mitochondrii IricVA chromosome, completepreprotein translocase subunit SecF2e-0654.7
NC_014632:402500:414162414162415052891Ilyobacter polytropus DSM 2926 chromosome, complete genomeprotein translocase subunit secF2e-0654.7
NC_008601:1151653:115507811550781156022945Francisella tularensis subsp. novicida U112, complete genomepreprotein translocase, subunit F, membrane protein2e-0654.7
NC_012883:1603744:1620734162073416222541521Thermococcus sibiricus MM 739, complete genomeSecD protein-export membrane protein6e-0653.1