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Query: NC_012583:683887 Vibrio cholerae O395 chromosome chromosome II, complete sequence

Start: 683887, End: 708107, Length: 24221

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002505:15501081550108158212332016Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete08286BLASTN svgBLASTP svg
NC_002505:86078986078988990629118Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete02036BLASTN svgBLASTP svg
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence01848BLASTN svgBLASTP svg
NC_005140:88385788385790391320057Vibrio vulnificus YJ016 chromosome II, complete sequence7e-44186BLASTN svgBLASTP svg
NC_013457:14047414047416441423941Vibrio sp. Ex25 chromosome 2, complete genome4e-24121BLASTN svgBLASTP svg