Pre_GI: BLASTP Hits

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Query: NC_012582:2626786:2632257 Vibrio cholerae O395 chromosome chromosome I, complete sequence

Start: 2632257, End: 2633117, Length: 861

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:2588435:259390325939032594763861Vibrio cholerae IEC224 chromosome I, complete sequenceLysR family transcriptional regulator5e-168590
NC_012668:1036000:104620110462011047061861Vibrio cholerae MJ-1236 chromosome 1, complete sequenceLysR family transcriptional regulator5e-168590
NC_012578:2479150:248462124846212485481861Vibrio cholerae M66-2 chromosome I, complete sequenceLysR family transcriptional regulator5e-168590
NC_002505:2537655:254760525476052548465861Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, LysR family5e-168590
NC_016445:2012294:201776220177622018622861Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeLysR family transcriptional regulator2e-167588
NC_013521:2254534:226738022673802268306927Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator3e-1066.2
NC_016906:1565868:158542915854291586319891Gordonia polyisoprenivorans VH2 chromosome, complete genomeLysR family transcriptional regulator1e-0963.9
NC_015563:4093650:411314241131424114005864Delftia sp. Cs1-4 chromosome, complete genomeLysR family transcriptional regulator2e-0859.7
NC_014718:791528:798917798917799834918Burkholderia rhizoxinica HKI 454 chromosome, complete genomeTranscriptional regulators, LysR family6e-0858.5
NC_021177:118710:134252134252135148897Streptomyces fulvissimus DSM 40593, complete genomeLysR-family transcriptional regulatory protein6e-0858.2
NC_015379:2505233:253862225386222539527906Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, LysR family9e-0857.8
NC_008687:388262:403185403185404078894Paracoccus denitrificans PD1222 chromosome 2, complete sequencetranscriptional regulator, LysR family3e-0755.8
NC_016819:1:466046605610951Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq202,transcriptional regulator4e-0755.8
NC_005085:2014987:204352020435202044464945Chromobacterium violaceum ATCC 12472, complete genomecyn operon transcriptional regulator6e-0755.1
NC_010805:530876:559660559660560562903Burkholderia multivorans ATCC 17616 chromosome 2, completeLysR family transcriptional regulator6e-0755.1
NC_010086:1907959:191474219147421915728987Burkholderia multivorans ATCC 17616 chromosome 2, completetranscriptional regulator, LysR family5e-0755.1
NC_013716:2476334:248837124883712489297927Citrobacter rodentium ICC168, complete genomeLysR-family transcriptional regulator7e-0754.7
NC_002516:2436304:244177124417712442691921Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator9e-0754.3
NC_014539:743523:758850758850759758909Burkholderia sp. CCGE1003 chromosome 1, complete sequenceLysR family transcriptional regulator1e-0654.3
NC_012918:356019:357906357906358787882Geobacter sp. M21 chromosome, complete genomeLysR family transcriptional regulator1e-0653.9
NC_012724:2202173:220217322021732203075903Burkholderia glumae BGR1 chromosome 1, complete genomePutative transcriptional regulator3e-0652.8
NC_016048:797762:806413806413807348936Oscillibacter valericigenes Sjm18-20, complete genomeputative LysR family transcriptional regulator3e-0652.4
NC_002927:3716894:376366537636653764576912Bordetella bronchiseptica RB50, complete genomeLysR-family transcriptional regulator7e-0651.2
NC_017195:517344:548563548563549453891Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeHTH-type transcriptional regulator GltC8e-0651.2
NC_009832:1280938:129663112966311297542912Serratia proteamaculans 568, complete genometranscriptional regulator, LysR family8e-0651.2
NC_004193:3530000:354330135433013544176876Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator9e-0651.2