Pre_GI: BLASTP Hits

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Query: NC_012560:201237:217624 Azotobacter vinelandii DJ, complete genome

Start: 217624, End: 218127, Length: 504

Host Lineage: Azotobacter vinelandii; Azotobacter; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism was first isolated from the soil in Vineland, New Jersey, although it is found worldwide. It is a large obligate aerobe that has one of the highest respiratory rates of any organism. Azotobacter vinelandii also produces a number of unusual nitrogenases which allow it to fix atmospheric nitrogen to ammonia, a compound it can then use as a nitrogen source. It protects the oxygen-sensitive nitrogenase enzymes through its high respiratory rate, which sequesters the nitrogenase complexes in an anoxic environment. This organism has a number of unusual characteristics. Under extreme environmental conditions, the cell will produce a cyst that is resistant to dessication and is surrounded by two capsular polysaccharide layers. This organism produces two industrially important polysaccharides, poly-beta-hydroxybutyrate (PHB) and alginate. PHB is a thermoplastic biopolymer, and alginate is used in the food industry. Alginate is also used by the pathogen Pseudomonas aeruginosa to infect the lungs of cystic fibrosis patients.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family1e-93341
NC_014540:2908912:291046129104612911012552Burkholderia sp. CCGE1003 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily6e-36149
NC_016822:4889656:489396448939644894485522Shigella sonnei 53G, complete genomeRNA polymerase sigma factor FecI9e-35145
NC_012759:4433500:445447244544724454993522Escherichia coli BW2952 chromosome, complete genomeRNA polymerase sigma factor FecI9e-35145
NC_010473:4596500:461754546175454618066522Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; RNA polymerase, sigma 19 factor9e-35145
AC_000091:4501430:452239445223944522915522Escherichia coli W3110 DNA, complete genomeRNA polymerase, sigma 19 factor9e-35145
NC_008027:2648560:265202626520262652541516Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-32138
NC_015556:2265940:230300923030092303524516Pseudomonas fulva 12-X chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-32137
NC_008027:4889662:489179248917924892286495Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-32136
NC_012962:4591295:459787345978734598394522Photorhabdus asymbiotica, complete genomeprobable rna polymerase sigma factor feci7e-32136
NC_018691:1293449:131432713143271314809483Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma factor FecI1e-30132
NC_004547:1174650:120912612091261209647522Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeRNA polymerase sigma-70 factor3e-30130
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase1e-29129
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)1e-29128
NC_015572:427732:454649454649455155507Methylomonas methanica MC09 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-29128
NC_014228:3591758:359930735993073599843537Xenorhabdus nematophila ATCC 19061, complete genomeProbable RNA polymerase sigma factor fecI2e-29128
NC_005966:1780468:178413917841391784624486Acinetobacter sp. ADP1, complete genomealternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR3e-28124
NC_016612:3843358:387250338725033873024522Klebsiella oxytoca KCTC 1686 chromosome, complete genomeRNA polymerase sigma factor FecI4e-28124
NC_005126:5188976:519303851930385193559522Photorhabdus luminescens subsp. laumondii TTO1, complete genomeRNA polymerase sigma-70 factor7e-28122
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily6e-27119
NC_007953:1088933:108893310889331089469537Burkholderia xenovorans LB400 chromosome 3, complete sequenceSigma-24 (FecI)8e-27119
NC_010322:768849:792731792731793237507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor2e-26118
NC_014640:2693060:269306026930602693566507Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI4e-26117
NC_010322:768849:785005785005785511507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor3e-25114
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-25113
NC_016830:3697173:371576837157683716166399Pseudomonas fluorescens F113 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor7e-25112
NC_014640:2693060:269731826973182697830513Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI3e-24110
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor2e-23108
NC_014640:5047201:506220250622025062732531Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI3e-23107
NC_014640:5047201:506631150663115066877567Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma-24 subunit2e-1995.5
NC_018691:359695:360597360597361097501Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-1789.4
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1581.6
NC_011144:2710876:272475927247592725310552Phenylobacterium zucineum HLK1, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-1373.9
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI3e-1270.9
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family2e-1168.6
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family2e-1168.6
NC_008687:133728:154267154267154779513Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily9e-1166.2
NC_009142:267550:269255269255269797543Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase sigma-70 factor, ECF family1e-1065.9
NC_015177:2642368:266242426624242662972549Pedobacter saltans DSM 12145 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1064.3
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1063.9
NC_004663:3801071:380107138010713801646576Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor8e-1063.2
NC_007947:1429165:144176714417671442282516Methylobacillus flagellatus KT, complete genomesigma-24 (FecI-like)1e-0962.8
NC_010510:339879:346474346474347019546Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0962.4
NC_014664:1360524:137481013748101375316507Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0960.8
NC_011958:1121387:114501711450171145514498Rhodobacter sphaeroides KD131 chromosome 2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0960.8
NC_015436:440033:442515442515443042528Spirochaeta coccoides DSM 17374 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0960.5
NC_009040:43791:618926189262389498Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0960.5
NC_015311:720631:726166726166726678513Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 27e-0959.7
NC_009937:5033152:503490050349005035424525Azorhizobium caulinodans ORS 571, complete genomeFecI-like protein1e-0859.3
NC_008686:1592073:161056416105641611091528Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0858.9
NC_015277:5211779:522919252291925229782591Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0857.8
NC_013061:2288134:229508222950822295651570Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma factor, sigma-70 family4e-0857.4
NC_019960:260997:265241265241265822582Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 14e-0857.4
NC_013061:1948365:196560719656071966182576Pedobacter heparinus DSM 2366, complete genomeRNA polymerase sigma-70 factor1e-0755.8
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor1e-0755.5
NC_002516:1474000:147472714747271475467741Pseudomonas aeruginosa PAO1, complete genomeprobable sigma-70 factor, ECF subfamily2e-0755.1
NC_003909:1205605:122684212268421227327486Bacillus cereus ATCC 10987, complete genomeRNA polymerase sigma-70 factor2e-0755.1
NC_007005:2191500:221606422160642216600537Pseudomonas syringae pv. syringae B728a, complete genomeRNA polymerase sigma-70 factor3e-0754.7
NC_013595:4951396:496504449650444965529486Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor2e-0651.6
NC_015594:1210736:121573312157331216245513Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeECF subfamily RNA polymerase sigma-24 subunit2e-0651.6
NC_013943:1019213:103299510329951033477483Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0651.2
NC_010172:1522707:154378715437871544350564Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0650.8
NC_014100:2782000:280274428027442803247504Caulobacter segnis ATCC 21756 chromosome, complete genomeRNA polymerase sigma-24 factor3e-0650.8
NC_015690:3941113:395186339518633952741879Paenibacillus mucilaginosus KNP414 chromosome, complete genomeECF family RNA polymerase sigma factor3e-0650.8
NC_016609:6136411:615649361564936157086594Niastella koreensis GR20-10 chromosome, complete genomeRNA polymerase, sigma subunit, SigX6e-0650.1
NC_013510:5394432:542642554264255427285861Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0650.1
NC_016935:1365463:137867613786761379554879Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF family RNA polymerase sigma factor6e-0650.1
NC_004663:4373902:437668943766894377198510Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor7e-0650.1
NC_015277:2283530:229844122984412299025585Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1
NC_010676:61098:808068080681477672Burkholderia phytofirmans PsJN chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily8e-0649.7
NC_020126:2216926:223261622326162233497882Myxococcus stipitatus DSM 14675, complete genomeECF family RNA polymerase sigma factor1e-0549.3