Pre_GI: BLASTN Hits

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Query: NC_012125:1693774 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1693774, End: 1721293, Length: 27520

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010102:86186086186089518233323Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,019390BLASTN svgBLASTP svg
NC_006511:85478585478589509940315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC018830BLASTN svgBLASTP svg
NC_004631:86200286200289659934598Salmonella enterica subsp. enterica serovar Typhi Ty2, complete018800BLASTN svgBLASTP svg
NC_006905:21753612175361220410628746Salmonella enterica subsp. enterica serovar Choleraesuis str016220BLASTN svgBLASTP svg
NC_011080:21616962161696219837536680Salmonella enterica subsp. enterica serovar Newport str. SL254,015560BLASTN svgBLASTP svg
NC_011083:22006132200613223455433942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,015530BLASTN svgBLASTP svg
NC_003198:21097752109775214492235148Salmonella enterica subsp. enterica serovar Typhi str. CT18,015140BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome014720BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete014660BLASTN svgBLASTP svg
NC_011149:21108612110861214483233972Salmonella enterica subsp. enterica serovar Agona str. SL483,014560BLASTN svgBLASTP svg
NC_009792:71495371495374483829886Citrobacter koseri ATCC BAA-895, complete genome04262BLASTN svgBLASTP svg
NC_010468:17750001775000180518230183Escherichia coli ATCC 8739, complete genome03731BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome03725BLASTN svgBLASTP svg
NC_007606:19998701999870202709927230Shigella dysenteriae Sd197, complete genome03691BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome03636BLASTN svgBLASTP svg
NC_010498:10354061035406106309927694Escherichia coli SMS-3-5, complete genome03588BLASTN svgBLASTP svg
NC_013716:22551022255102228502629925Citrobacter rodentium ICC168, complete genome03251BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome03051BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome03043BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome03043BLASTN svgBLASTP svg
NC_011750:10349191034919106622831310Escherichia coli IAI39 chromosome, complete genome02724BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome02482BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome02482BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome02462BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome02458BLASTN svgBLASTP svg
NC_008563:21822702182270221156429295Escherichia coli APEC O1, complete genome02415BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome02391BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome02389BLASTN svgBLASTP svg
NC_020063:16597951659795169109931305Enterobacteriaceae bacterium strain FGI 57, complete genome02294BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome01798BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome01798BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome01798BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome01727BLASTN svgBLASTP svg
NC_009648:26997392699739273776838030Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome01691BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome01596BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01548BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome01374BLASTN svgBLASTP svg
NC_013282:28277572827757286060332847Cronobacter turicensis, complete genome01320BLASTN svgBLASTP svg
NC_020260:11841741184174121484630673Cronobacter sakazakii Sp291, complete genome01281BLASTN svgBLASTP svg
NC_009778:11417161141716117336531650Enterobacter sakazakii ATCC BAA-894, complete genome01193BLASTN svgBLASTP svg
NC_020181:36050036050040550545006Enterobacter aerogenes EA1509E, complete genome01179BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome01179BLASTN svgBLASTP svg
NC_011740:21351412135141215307917939Escherichia fergusonii ATCC 35469, complete genome01136BLASTN svgBLASTP svg
NC_015968:29753512975351299850323153Enterobacter asburiae LF7a chromosome, complete genome01106BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome01057BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome01057BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome01051BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome01051BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome01041BLASTN svgBLASTP svg
NC_013850:16580101658010169680438795Klebsiella variicola At-22 chromosome, complete genome01029BLASTN svgBLASTP svg
NC_009800:21560912156091218719031100Escherichia coli HS, complete genome01017BLASTN svgBLASTP svg
NC_014837:2803447*2803447283151828072Pantoea sp. At-9b chromosome, complete genome4e-163583BLASTN svgBLASTP svg
NC_015061:19022511902251193341231162Rahnella sp. Y9602 chromosome, complete genome3e-157563BLASTN svgBLASTP svg
NC_014562:20499212049921207971629796Pantoea vagans C9-1 chromosome, complete genome7e-146525BLASTN svgBLASTP svg
NC_014306:32103113210311325712846818Erwinia billingiae Eb661, complete genome5e-144519BLASTN svgBLASTP svg
NC_013961:2260250*2260250228983729588Erwinia amylovora, complete genome7e-143515BLASTN svgBLASTP svg
NC_010694:15020191502019153332131303Erwinia tasmaniensis, complete genome2e-140507BLASTN svgBLASTP svg
NC_012917:15060831506083154696940887Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-128468BLASTN svgBLASTP svg
NC_013956:27496852749685278184532161Pantoea ananatis LMG 20103 chromosome, complete genome1e-98369BLASTN svgBLASTP svg
NC_015224:17638481763848179825034403Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,7e-72280BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome4e-58234BLASTN svgBLASTP svg
NC_013508:1289159*1289159133392244764Edwardsiella tarda EIB202, complete genome9e-50206BLASTN svgBLASTP svg
NC_013421:32794993279499331516735669Pectobacterium wasabiae WPP163, complete genome9e-50206BLASTN svgBLASTP svg
NC_020211:17045001704500175039445895Serratia marcescens WW4, complete genome7e-35157BLASTN svgBLASTP svg
NC_015567:16604621660462170120640745Serratia sp. AS9 chromosome, complete genome3e-28135BLASTN svgBLASTP svg
NC_015566:16592881659288170119441907Serratia sp. AS12 chromosome, complete genome3e-28135BLASTN svgBLASTP svg
NC_009832:17191491719149175798638838Serratia proteamaculans 568, complete genome4e-27131BLASTN svgBLASTP svg
NC_012691:22250002225000224630921310Tolumonas auensis DSM 9187, complete genome3e-25125BLASTN svgBLASTP svg
NC_012880:38273903827390385759930210Dickeya dadantii Ech703, complete genome2e-23119BLASTN svgBLASTP svg
NC_010334:1783500*1783500181555632057Shewanella halifaxensis HAW-EB4, complete genome2e-22115BLASTN svgBLASTP svg
NC_020064:15475241547524158410636583Serratia marcescens FGI94, complete genome2e-19105BLASTN svgBLASTP svg
NC_014972:54414654414658609941954Desulfobulbus propionicus DSM 2032 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_009009:1792317*1792317181459922283Streptococcus sanguinis SK36, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007520:1627978*1627978164652818551Thiomicrospira crunogena XCL-2, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_011146:1293202*1293202131298219781Geobacter bemidjiensis Bem, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_006576:1551939*1551939158375331815Synechococcus elongatus PCC 6301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006834:78750078750081555228053Xanthomonas oryzae pv. oryzae KACC10331, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014500:4257145*4257145428370126557Dickeya dadantii 3937 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015424:16895001689500172544435945Aeromonas veronii B565 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013740:2141523*2141523216409922577Acidaminococcus fermentans DSM 20731, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_018691:1864796*1864796190445339658Alcanivorax dieselolei B5 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009997:35831663583166360265419489Shewanella baltica OS195, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008321:1523323*1523323156037837056Shewanella sp. MR-4, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002516:24363042436304246509928796Pseudomonas aeruginosa PAO1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008260:1044440*1044440106265118212Alcanivorax borkumensis SK2, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014541:475350*47535053312757778Ferrimonas balearica DSM 9799 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_003143:27784942778494279956221069Yersinia pestis CO92, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_005810:25496802549680258809938420Yersinia pestis biovar Microtus str. 91001, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008149:23373362337336236141524080Yersinia pestis Nepal516, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008150:22071982207198223127724080Yersinia pestis Antiqua, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008577:15799501579950160290022951Shewanella sp. ANA-3 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_010159:17940001794000181359119592Yersinia pestis Angola, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010465:17907391790739181268021942Yersinia pseudotuberculosis YPIII, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011884:14138311413831143422620396Cyanothece sp. PCC 7425, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003450:35975935975940443344675Corynebacterium glutamicum ATCC 13032, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005139:34350034350037669433195Vibrio vulnificus YJ016 chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_006958:35976035976040443244673Corynebacterium glutamicum ATCC 13032, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012997:1446037*1446037147363527599Teredinibacter turnerae T7901, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014219:3254268*3254268329570341436Bacillus selenitireducens MLS10 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014541:11659911165991120221836228Ferrimonas balearica DSM 9799 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004459:767127*76712778659919473Vibrio vulnificus CMCP6 chromosome I, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_008312:27984632798463282561927157Trichodesmium erythraeum IMS101, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009052:71058710589215921102Shewanella baltica OS155, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012214:15885731588573162042231850Erwinia pyrifoliae Ep1/96, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012912:4012112*4012112403907126960Dickeya zeae Ech1591, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-0763.9BLASTN svgBLASTP svg
NC_015144:997587*997587102029322707Weeksella virosa DSM 16922 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013406:2207520*2207520223225024731Paenibacillus sp. Y412MC10 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011883:48718748718751019523009Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,3e-0661.9BLASTN svgBLASTP svg
NC_009850:661802*66180268186120060Arcobacter butzleri RM4018, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007498:20878112087811212235934549Pelobacter carbinolicus DSM 2380, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004668:1010610*1010610103713326524Enterococcus faecalis V583, complete genome3e-0661.9BLASTN svgBLASTP svg