Pre_GI: BLASTP Hits

Some Help

Query: NC_012125:894955:929828 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 929828, End: 930631, Length: 804

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:894136:929517929517930359843Dickeya dadantii 3937 chromosome, complete genomeputative capsid scaffolding protein9e-60230
NC_013592:804288:830223830223831059837Dickeya dadantii Ech586, complete genomecapsid scaffolding5e-59227
NC_013892:992811:998643998643999482840Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-58225
NC_015061:2770856:277085627708562771695840Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding8e-55213
NC_009348:4135002:413857741385774139449873Aeromonas salmonicida subsp. salmonicida A449, complete genomephage capsid scaffolding protein7e-31134
NC_015224:3291736:330998633099863310507522Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Phage capsid scaffolding8e-30130
NC_008750:3314309:332613733261373327057921Shewanella sp. W3-18-1, complete genomephage capsid scaffolding1e-27124
NC_011883:269497:288701288701289531831Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,capsid scaffolding2e-25115
NC_008751:3214000:321582532158253216673849Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage capsid scaffolding1e-24114
NC_008751:1762562:176433317643331765193861Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage capsid scaffolding6e-24111
NC_003902:3514000:353195935319593532801843Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related capsid scaffold protein2e-1996.3
NC_009656:5185704:5201873520187352030181146Pseudomonas aeruginosa PA7 chromosome, complete genomescaffold2e-1996.3
NC_020209:3262000:327625932762593277137879Pseudomonas poae RE*1-1-14, complete genomeputative capsid scafolding protein7e-1891.3
NC_012660:1737423:174070417407041741582879Pseudomonas fluorescens SBW25 chromosome, complete genomeputative capsid scafolding protein2e-1789.4
NC_010943:325739:326789326789327652864Stenotrophomonas maltophilia K279a, complete genomepresumed capsid scaffolding protein (gpo)2e-1582.8
NC_012724:147454:150329150329151141813Burkholderia glumae BGR1 chromosome 1, complete genomePhage capsid scaffolding protein (GPO)3e-1582.4
NC_012724:1892000:190577019057701906642873Burkholderia glumae BGR1 chromosome 1, complete genomePhage capsid scaffolding protein2e-1480.1
NC_007963:1582089:158574715857471586562816Chromohalobacter salexigens DSM 3043, complete genomephage capsid scaffolding3e-1479
NC_009648:3803622:382293638229363823790855Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage capsid scaffolding protein6e-1478.2
NC_012917:3565268:358854235885423589396855Pectobacterium carotovorum subsp. carotovorum PC1, complete genomecapsid scaffolding6e-1478.2
NC_016845:4046142:406473640647364065590855Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage capsid scaffolding protein6e-1478.2
NC_014323:992978:994790994790995632843Herbaspirillum seropedicae SmR1 chromosome, complete genomephage-related capsid scaffold bacteriophage protein2e-1376.3
NC_008800:1870596:187241418724141873268855Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative phage capsid scaffolding protein2e-1376.3
NC_011353:2825500:282553128255312826385855Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage capsid scaffolding protein GpO2e-1273.6
NC_013008:2824511:282451128245112825365855Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephage capsid scaffolding protein GpO2e-1273.6
NC_016810:2871689:287344528734452874278834Salmonella enterica subsp. enterica serovar Typhimurium strputative capsid protein1e-1273.6
NC_016857:2871689:287344528734452874278834Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative capsid protein1e-1273.6
NC_017046:2869873:287218728721872873020834Salmonella enterica subsp. enterica serovar Typhimurium str. 798capsid protein1e-1273.6
NC_003198:4453457:449222544922254493058834Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative capsid protein1e-1273.6
NC_006511:2677964:268046026804602681293834Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative capsid protein1e-1273.6
NC_015856:1152021:116838711683871169373987Collimonas fungivorans Ter331 chromosome, complete genomeputative bacteriophage protein2e-1273.2
NC_015061:1598920:161885616188561619707852Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding3e-1272.4
NC_017047:4037674:405581740558174056668852Rahnella aquatilis HX2 chromosome, complete genomecapsid scaffolding protein4e-1272
NC_014837:3766426:377019137701913771024834Pantoea sp. At-9b chromosome, complete genomecapsid scaffolding5e-1271.6
NC_003295:2111730:211173021117302112569840Ralstonia solanacearum GMI1000, complete genomePROBABLE BACTERIOPHAGE PROTEIN5e-1271.6
NC_020181:5182568:518371251837125184566855Enterobacter aerogenes EA1509E, complete genomePhage capsid scaffolding protein6e-1271.2
NC_015061:596247:623225623225624076852Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding7e-1271.2
NC_013956:3525711:352816235281623529124963Pantoea ananatis LMG 20103 chromosome, complete genomeO1e-1170.9
NC_020260:312805:331321331321332148828Cronobacter sakazakii Sp291, complete genomecapsid scaffold-like protein1e-1170.5
NC_010694:614985:639310639310640173864Erwinia tasmaniensis, complete genomePutative capsid scaffolding protein1e-1170.5
NC_011149:2802199:280540128054012806234834Salmonella enterica subsp. enterica serovar Agona str. SL483,phage capsid scaffolding protein3e-1169.3
NC_014306:1244721:125997012599701260824855Erwinia billingiae Eb661, complete genomecapsid scaffolding protein3e-1168.9
NC_011205:2938356:294064529406452941478834Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage capsid scaffolding protein5e-1168.2
NC_016845:1773416:178768417876841788517834Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Presumed capsid scaffolding protein (GpO)6e-1168.2
NC_012947:2898179:289874428987442899496753Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecapsid scaffolding7e-1167.8
NC_020211:4598217:460162646016264602441816Serratia marcescens WW4, complete genomephage capsid scaffolding protein GpO2e-1066.2
NC_013282:3389619:339300833930083393754747Cronobacter turicensis, complete genomePresumed capsid-scaffolding protein4e-1065.5
NC_007613:761234:775348775348776181834Shigella boydii Sb227, complete genomeputative capsid scaffolding protein4e-1065.5
NC_016818:1605918:162268916226891623534846Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage capsid scaffolding protein (GPO) serine peptidase4e-1065.5
NC_017047:1551836:156944015694401570285846Rahnella aquatilis HX2 chromosome, complete genomecapsid scaffolding protein4e-1065.5
NC_014306:103545:121387121387122223837Erwinia billingiae Eb661, complete genomePutative phage capsid scaffolding protein3e-1065.5
NC_012962:4942000:495355249535524954388837Photorhabdus asymbiotica, complete genomeputative capsid scaffolding protein1e-0963.9
NC_017059:3688688:369059536905953691395801Rhodospirillum photometricum DSM 122, complete genomePhage-related capsid scaffolding protein (GPO-like)1e-0860.5