Pre_GI: BLASTP Hits

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Query: NC_012125:894955:926343 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 926343, End: 926540, Length: 198

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:2870428:287067128706712870868198Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein5e-28122
NC_009436:1466580:148363214836321483802171Enterobacter sp. 638, complete genomehypothetical protein4e-0960.1
NC_015061:2770856:277494527749452775151207Rahnella sp. Y9602 chromosome, complete genomehypothetical protein5e-0960.1
NC_014837:3766426:377747437774743777662189Pantoea sp. At-9b chromosome, complete genomehypothetical protein4e-0650.1