Pre_GI: BLASTP Hits

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Query: NC_012125:4536383:4556715 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4556715, End: 4556921, Length: 207

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014304:77715:878618786188307447Erwinia billingiae Eb661 plasmid pEB102, complete sequenceProtein SamA1e-21101
NC_014842:19411:458674586746373507Pantoea sp. At-9b plasmid pPAT9B05, complete sequencepeptidase S24/S26A/S26B1e-21101
NC_014305:97055:112117112117112545429Erwinia billingiae Eb661 plasmid pEB170, complete sequenceDNA polymerase V subunit5e-2096.3
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-1993.6
NC_016816:4129299:417061241706124171037426Pantoea ananatis LMG 5342, complete genomeUV protection protein5e-1683.2
NC_006856:95830:100863100863101300438Salmonella enterica subsp. enterica serovar Choleraesuis strImpA8e-1682.4
NC_007941:11319:558295582956266438Escherichia coli UTI89 plasmid pUTI89, complete sequenceUV protection and mutation protein1e-1582
NC_015424:2726223:276526527652652765627363Aeromonas veronii B565 chromosome, complete genomepeptidase S24-like domain-containing protein2e-1270.9
NC_013716:4306695:433331543333154333674360Citrobacter rodentium ICC168, complete genomeputative SOS response protein3e-1270.5
NC_016832:948029:979172979172979411240Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Protein umuD'1e-1168.2
NC_017046:2026672:203809220380922038331240Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein1e-1168.2
NC_008570:1143578:116544011654401165883444Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein UmuD3e-1167
NC_011283:2836000:289026328902632890745483Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuD4e-1166.6
NC_009648:1541699:159551215955121595931420Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA polymerase V subunit UmuD5e-1166.6
NC_015424:3520783:355284035528403553283444Aeromonas veronii B565 chromosome, complete genomeprotein UmuD6e-1166.2
NC_010473:1245284:127023112702311270650420Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase V, subunit D6e-1166.2
NC_009801:1296488:132144813214481321867420Escherichia coli E24377A, complete genomeprotein UmuD6e-1166.2
NC_008253:1228485:125123812512381251657420Escherichia coli 536, complete genomeUmuD protein6e-1166.2
NC_011751:1446073:147704214770421477461420Escherichia coli UMN026 chromosome, complete genomeDNA polymerase V subunit UmuD6e-1166.2
NC_012967:1205985:123091712309171231336420Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase V subunit UmuD6e-1166.2
NC_004631:948054:981317981317981736420Salmonella enterica subsp. enterica serovar Typhi Ty2, completeUmuD protein6e-1166.2
NC_016810:2027311:203873120387312039150420Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein6e-1166.2
NC_016856:2085283:209256820925682092987420Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase V subunit UmuD6e-1166.2
NC_016857:2027311:203873120387312039150420Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase V subunit UmuD6e-1166.2
NC_016863:2029340:204076020407602041179420Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase V subunit UmuD6e-1166.2
NC_011745:1287714:131060513106051311024420Escherichia coli ED1a chromosome, complete genomeDNA polymerase V subunit UmuD9e-1165.9
NC_011283:3177350:318657131865713187053483Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuD8e-1165.9
NC_016514:2476359:248828724882872488781495Enterobacter cloacae EcWSU1 chromosome, complete genomeUmuD1e-1065.5
NC_011742:1221416:124553912455391245958420Escherichia coli S88 chromosome, complete genomeDNA polymerase V subunit UmuD1e-1065.1
NC_004431:1443968:146808314680831468502420Escherichia coli CFT073, complete genomeUmuD protein1e-1065.1
NC_016445:89500:106849106849107298450Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA polymerase V4e-1063.5
NC_012668:3037345:303929130392913039740450Vibrio cholerae MJ-1236 chromosome 1, complete sequenceerror-prone repair protein UmuD4e-1063.5
NC_009436:2395913:240450524045052404924420Enterobacter sp. 638, complete genomeDNA polymerase V subunit UmuD4e-1063.5
NC_015761:1599000:160588716058871606315429Salmonella bongori NCTC 12419, complete genomeDNA repair protein6e-1063.2
NC_011601:1315746:133733613373361337755420Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA polymerase V subunit UmuD7e-1062.8
NC_008570:2216736:225027522502752250697423Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeumuD protein1e-0962
NC_009436:2056000:206974720697472070181435Enterobacter sp. 638, complete genomeprophage repressor1e-0962
NC_015566:3269469:328448832844883284913426Serratia sp. AS12 chromosome, complete genomepeptidase S24/S26A/S26B1e-0962
NC_016002:1741109:175018817501881750616429Pseudogulbenkiania sp. NH8B, complete genomepeptidase S24 and S26 domain containing protein2e-0961.2
NC_016002:2179969:218853921885392188967429Pseudogulbenkiania sp. NH8B, complete genomepeptidase S24 and S26 domain containing protein2e-0961.2
NC_010554:2646806:272478627247862725235450Proteus mirabilis HI4320, complete genomeDNA repair protein2e-0961.2
NC_012559:1497548:152788615278861528506621Laribacter hongkongensis HLHK9, complete genomeUmuD protein4e-0960.5
NC_020064:1962172:197446219744621974884423Serratia marcescens FGI94, complete genomeSOS response transcriptional repressor, RecA-mediated autopeptidase2e-0858.2
NC_009792:1739970:174737317473731747789417Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-0856.6
NC_017047:1934430:194357819435781944000423Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase V subunit UmuD6e-0856.2
NC_021066:1778000:178527517852751785694420Raoultella ornithinolytica B6, complete genomeDNA polymerase V subunit UmuD1e-0755.5
NC_015851:10915:328603286033324465Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceSOS-response repressor and protease LexA5e-0649.7