Pre_GI: BLASTP Hits

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Query: NC_012125:4536383:4549715 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4549715, End: 4550011, Length: 297

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:639726:654256654256654528273Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-1580.5
NC_012962:3864000:387315338731533873449297Photorhabdus asymbiotica, complete genomehypothetical protein3e-1890.5
NC_011149:4677412:468401946840194684312294Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein6e-0649.3
NC_003198:4453457:446675444667544467050297Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-52204
NC_013716:3512950:352107335210733521366294Citrobacter rodentium ICC168, complete genomehypothetical protein2e-0651.2
NC_016832:4425330:443862744386274438923297Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-52204
NC_013421:701005:731467731467731739273Pectobacterium wasabiae WPP163, complete genomehypothetical protein9e-1372.4