Pre_GI: BLASTP Hits

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Query: NC_012125:4536383:4549277 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4549277, End: 4549678, Length: 402

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4425330:443817844381784438630453Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-73273
NC_003198:4453457:446617344661734466757585Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-73273
NC_005126:1315474:134152613415261341924399Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-27119
NC_012962:3864000:387344938734493873835387Photorhabdus asymbiotica, complete genomehypothetical protein1e-25115
NC_004547:639726:653663653663654259597Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-1994
NC_013421:701005:731015731015731470456Pectobacterium wasabiae WPP163, complete genomehypothetical protein9e-1889