Pre_GI: BLASTP Hits

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Query: NC_012125:4536383:4548299 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4548299, End: 4548679, Length: 381

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4425330:443720044372004437580381Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-60230
NC_003198:4453457:446532744653274465707381Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-60230
NC_014029:331919:388103388103388501399Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-0755.1
NC_009832:4482500:450043745004374500853417Serratia proteamaculans 568, complete genomehypothetical protein1e-0651.6