Pre_GI: BLASTP Hits

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Query: NC_012125:4536383:4541059 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4541059, End: 4541448, Length: 390

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:445813344581334458522390Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-54211
NC_014029:331919:383405383405383806402Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-1064.3
NC_015567:346500:351451351451351825375Serratia sp. AS9 chromosome, complete genomehypothetical protein2e-1064.3
NC_015566:345084:351286351286351660375Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-1064.3