Pre_GI: BLASTP Hits

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Query: NC_012125:3879917:3901775 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 3901775, End: 3902884, Length: 1110

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:3905875:3929843392984339309521110Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative selenocysteine synthase0715
NC_009792:4693152:4708751470875147098601110Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein0640
NC_014831:1843835:1869139186913918702541116Thermaerobacter marianensis DSM 12885 chromosome, complete genomepyridoxal phosphate-dependent enzyme3e-78292
NC_011658:4616933:4616933461693346180361104Bacillus cereus AH187 chromosome, complete genomeputative pyridoxal phosphate-dependent enzyme1e-77290
NC_016771:4569941:4570698457069845718011104Bacillus cereus NC7401, complete genomepyridoxal phosphate-dependent enzyme1e-77290
NC_011969:4556296:4558787455878745598901104Bacillus cereus Q1 chromosome, complete genomel-seryl-tRNA(sec) selenium transferase; selenocysteine synthase1e-77290
NC_017200:4632000:4641168464116846422711104Bacillus thuringiensis serovar finitimus YBT-020 chromosome,putative pyridoxal phosphate-dependent enzyme1e-77290
NC_014335:4566692:4568453456845345695621110Bacillus cereus biovar anthracis str. CI chromosome, completeL-seryl-tRNA(Sec) selenium transferase1e-77290
NC_012472:4630485:4636889463688946379921104Bacillus cereus 03BB102, complete genomeputative pyridoxal phosphate-dependent enzyme2e-77289
NC_004722:4767294:4768051476805147691541104Bacillus cereus ATCC 14579, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-77289
NC_003909:4614789:4613708461370846148111104Bacillus cereus ATCC 10987, complete genomepyridoxal phosphate-dependent enzyme, putative3e-77288
NC_016779:4588000:4590537459053745916401104Bacillus cereus F837/76 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase-related protein5e-77288
NC_008600:4626464:4632871463287146339741104Bacillus thuringiensis str. Al Hakam, complete genomeselenocysteine synthase5e-77288
NC_011725:4799905:4799905479990548010081104Bacillus cereus B4264 chromosome, complete genomepyridoxal phosphate-dependent enzyme8e-77287
NC_011772:4763542:4770607477060747717101104Bacillus cereus G9842, complete genomeputative pyridoxal phosphate-dependent enzyme1e-75283
NC_014171:4681822:4683588468358846846311044Bacillus thuringiensis BMB171 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-71270
NC_014829:3964616:3982037398203739831401104Bacillus cellulosilyticus DSM 2522 chromosome, complete genomepyridoxal phosphate-dependent enzyme6e-71268
NC_004193:3325612:3334303333430333353701068Oceanobacillus iheyensis HTE831, complete genomeL-seryl-tRNA selenium transferase7e-67254
NC_015065:18189:3082030820324181599Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequenceCys/Met metabolism pyridoxal-phosphate-dependent protein1e-22107
NC_014150:582093:5974345974345987891356Brachyspira murdochii DSM 12563 chromosome, complete genomeL-seryl-tRNA selenium transferase2e-1687
NC_015065:18189:3298232982342471266Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequenceselenocysteine synthase (seryl-tRNASer selenium transferase)-like protein2e-1584
NC_003869:1812642:1816203181620318176001398Thermoanaerobacter tengcongensis MB4, complete genomeselenocysteine synthase2e-1583.6
NC_014972:2659388:2669336266933626707811446Desulfobulbus propionicus DSM 2032 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase9e-1581.6
NC_015873:790961:8094818094818108781398Megasphaera elsdenii DSM 20460, complete genomeL-seryl-tRNA(Sec) selenium transferase9e-1581.3
NC_016584:2244966:2255807225580722571891383Desulfosporosinus orientis DSM 765 chromosome, complete genomeseryl-tRNA(Sec) selenium transferase2e-1480.1
NC_000918:707801:7149287149287162861359Aquifex aeolicus VF5, complete genomeselenocysteine synthase4e-1479.3
NC_008751:607209:6109826109826124511470Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeL-seryl-tRNA(Sec) selenium transferase9e-1478.2
NC_014844:1270618:1317169131716913185811413Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeL-seryl-tRNA selenium transferase4e-1272.4
NC_014623:4535544:4555837455583745572371401Stigmatella aurantiaca DW4/3-1 chromosome, complete genomel-seryl-tRNA selenium transferase1e-1171.2
NC_013282:116649:1362901362901377141425Cronobacter turicensis, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-1170.5
NC_010939:1809446:1811278181127818126631386Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeL-seryl-tRNA(Sec) selenium transferase4e-1169.7
NC_015424:2357600:2389841238984123913191479Aeromonas veronii B565 chromosome, complete genomeL-seryl-tRNA selenium transferase1e-1067.4
NC_012559:731859:7346817346817361141434Laribacter hongkongensis HLHK9, complete genomeSelenocysteine synthase1e-1067.4
NC_002663:1988000:1992896199289619942781383Pasteurella multocida subsp. multocida str. Pm70, complete genomeselenocysteine synthase2e-1067
NC_010718:1229355:1230422123042212318521431Natranaerobius thermophilus JW/NM-WN-LF, complete genomeL-seryl-tRNA(Sec) selenium transferase6e-1065.5
NC_016148:1175999:1194571119457111959711401Thermovirga lienii DSM 17291 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase8e-1065.1
NC_012225:377441:3969463969463982921347Brachyspira hyodysenteriae WA1, complete genomeselenocysteine synthase9e-1065.1
NC_015856:940625:9617809617809632371458Collimonas fungivorans Ter331 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-0963.9
NC_010498:3988351:3991534399153439929251392Escherichia coli SMS-3-5, complete genomeL-seryl-tRNA selenium transferase3e-0963.5
NC_009053:1785447:1787279178727917886641386Actinobacillus pleuropneumoniae L20, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-0962.8
NC_008570:2768795:2791890279189027933261437Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeL-seryl-tRNA selenium transferase5e-0962.4
NC_014633:713285:7132857132857146731389Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceL-seryl-tRNA selenium transferase5e-0962.4
NC_016513:974402:9730119730119744051395Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeselenocysteine synthase8e-0961.6
NC_013416:668152:6667616667616681551395Aggregatibacter actinomycetemcomitans D11S-1, complete genomeL-seryl-tRNA selenium transferase8e-0961.6
NC_004347:103967:1142381142381156591422Shewanella oneidensis MR-1, complete genomeselenocysteine synthase8e-0961.6
NC_019902:831911:8609598609598624041446Thioalkalivibrio nitratireducens DSM 14787, complete genomeL-seryl-tRNA(Sec) selenium transferase9e-0961.6
NC_007650:832507:8334218334218349081488Burkholderia thailandensis E264 chromosome II, complete sequenceL-seryl-tRNA selenium transferase1e-0861.2
NC_012721:1052883:1053832105383210552951464Burkholderia glumae BGR1 chromosome 2, complete genomeL-seryl-tRNA selenium transferase1e-0861.2
NC_010322:583842:6130836130836145101428Pseudomonas putida GB-1 chromosome, complete genomeselenocysteine synthase4e-0859.3
NC_004337:3590323:3734155373415537355461392Shigella flexneri 2a str. 301, complete genomeselenocysteine synthase9e-0858.2
NC_012947:126596:1452341452341466251392Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeselenocysteine synthase9e-0858.2
NC_010468:111504:1335761335761349671392Escherichia coli ATCC 8739, complete genomeL-seryl-tRNA(Sec) selenium transferase9e-0858.2
NC_009800:3787320:3789161378916137905521392Escherichia coli HS, complete genomeL-seryl-tRNA selenium transferase9e-0858.2
NC_016902:119935:1423751423751437661392Escherichia coli KO11FL chromosome, complete genomeL-seryl-tRNA selenium transferase2e-0757
CP002516:119935:1423751423751437661392Escherichia coli KO11, complete genomeL-seryl-tRNA selenium transferase2e-0757