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Query: NC_012125:373630:396051 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 396051, End: 396245, Length: 195

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011274:376970:399390399390399584195Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91metal-binding transport protein5e-31132
NC_011083:403022:448529448529448723195Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein5e-31132
NC_011149:361765:384199384199384393195Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-31132
NC_016832:2581145:258483625848362585030195Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-31132
NC_011080:383441:405862405862406056195Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein7e-30129
NC_011992:1179084:119174711917471191941195Acidovorax ebreus TPSY, complete genomeHeavy metal transport/detoxification protein4e-1993.2
NC_010067:2488141:249482324948232494972150Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1373.6
NC_009668:529175:547962547962548177216Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceheavy metal transport/detoxification protein7e-0856.2
NC_009620:1531000:154802915480291548250222Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceheavy metal transport/detoxification protein1e-0652
NC_003240:137907:137907137907138101195Nostoc sp. PCC 7120 plasmid pCC7120beta, complete sequencehypothetical protein2e-0651.2