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Query: NC_012125:373630:385705 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 385705, End: 386346, Length: 642

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2721374:272673727267372727378642Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-120429
NC_016831:2627515:263287826328782633519642Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator2e-119427
NC_011274:376970:389044389044389685642Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator2e-119427
NC_011083:403022:438183438183438824642Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator2e-119427
NC_011149:361765:373853373853374494642Salmonella enterica subsp. enterica serovar Agona str. SL483,putative response regulator2e-119427
NC_011080:383441:395516395516396157642Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator3e-119427
NC_011147:2463299:246859424685942469235642Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator4e-119426
NC_004631:2584244:258953825895382590065528Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transcriptionl regulator9e-96349
NC_006511:2467763:247305824730582473585528Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transcriptionl regulator9e-96349
NC_003198:378844:391048391048391575528Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transcriptionl regulator9e-96349
NC_016832:2581145:258643925864392586885447Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transcriptionl regulator1e-83308
NC_020064:3998715:404193840419384042582645Serratia marcescens FGI94, complete genomeDNA-binding protein with HTH domain4e-1788.2
NC_006625:1:107011070111333633Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceputative response regulator4e-1271.6
NC_012731:3411161:344578434457843446416633Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeregulator of mucoid phenotype8e-1270.5