Pre_GI: BLASTP Hits

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Query: NC_012125:373630:380252 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 380252, End: 380986, Length: 735

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:361765:368387368387369121735Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transmembrane regulator3e-139494
NC_011149:361765:371579371579372322744Salmonella enterica subsp. enterica serovar Agona str. SL483,putative response regulator4e-52204
NC_006905:401154:430112430112430876765Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-141502
NC_011205:371001:389282389282389728447Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transmembrane regulator2e-80298
NC_011294:346915:364877364877365641765Salmonella enterica subsp. enterica serovar Enteritidis strtransmembrane regulator8e-138489
NC_011274:376970:386772386772387515744Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transmembrane regulator7e-52203
NC_016831:2627515:263504826350482635791744Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transmembrane regulator7e-52203
NC_016831:2627515:263824026382402638635396Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transmembrane regulator1e-70266
NC_011083:403022:435911435911436654744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator1e-52206
NC_011083:403022:432730432730433464735Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative transmembrane regulator5e-140496
NC_011080:383441:390063390063390797735Salmonella enterica subsp. enterica serovar Newport str. SL254,putative transmembrane regulator9e-140495
NC_011080:383441:393244393244393987744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator1e-52206
NC_011147:2463299:247395724739572474691735Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator5e-140496
NC_011147:2463299:247082524708252471508684Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator3e-43175
NC_006511:2467763:247528924752892475972684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator3e-43175
NC_006511:2467763:247842124784212479155735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator5e-140496
NC_010102:2721374:272890927289092729652744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-52205
NC_010102:2721374:273210127321012732865765Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-141500
NC_012125:373630:383397383397384176780Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator2e-51202
NC_011094:380428:398373398373399107735Salmonella enterica subsp. enterica serovar Schwarzengrund strtransmembrane regulator2e-138491
NC_011094:380428:401567401567402310744Salmonella enterica subsp. enterica serovar Schwarzengrund strresponse regulator5e-52204
NC_003198:378844:388659388659389402744Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator5e-52204
NC_003198:378844:385465385465386199735Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator1e-135482
NC_016832:2581145:258861225886122589355744Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator5e-52204
NC_016832:2581145:259181525918152592549735Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator1e-135482
NC_004631:2584244:259171125917112592454744Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator5e-52204
NC_004631:2584244:259491425949142595648735Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator1e-135482
NC_016810:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium strtransmembrane regulator1e-139495
NC_016856:365665:386264386264387028765Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein1e-139495
NC_017046:366905:385084385084385818735Salmonella enterica subsp. enterica serovar Typhimurium str. 798transmembrane regulator1e-139495
NC_016857:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein1e-139495
NC_016863:367404:385553385553386317765Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein1e-139495
NC_003197:367430:385573385573386337765Salmonella typhimurium LT2, complete genomeputative inner membrane protein1e-139495
NC_017328:3088907:314242331424233143028606Shigella flexneri 2002017 chromosome, complete genomeMembrane protein9e-0753.9
NC_004741:3041294:309354530935453094150606Shigella flexneri 2a str. 2457T, complete genomehypothetical protein9e-0753.9
NC_004337:3049118:310405631040563104661606Shigella flexneri 2a str. 301, complete genomehypothetical protein9e-0753.9
NC_008800:3955284:396122039612203961819600Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,membrane protein2e-0859.7
NC_015224:3820338:383951838395183840099582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,membrane protein2e-0859.3
NC_009708:692508:708541708541709128588Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein8e-0960.8
NC_006155:3992818:400349940034994004086588Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-0962.8
NC_010634:3905369:391499039149903915577588Yersinia pseudotuberculosis PB1/+, complete genomeputative transcriptional regulator, CadC2e-0962.8
NC_010465:733916:748971748971749558588Yersinia pseudotuberculosis YPIII, complete genomeputative transcriptional regulator, CadC1e-0963.2