Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2983719 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2983719, End: 2984129, Length: 411

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2967464:301442930144293014839411Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-74276
NC_006905:2987863:300333730033373003747411Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-74276
NC_016863:2974333:301808930180893018610522Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-71266
NC_016857:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-71266
NC_016856:3026426:306983630698363070357522Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-71266
NC_016810:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-71266
NC_003197:3005842:304959930495993050120522Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-71266
NC_011294:2919906:293446929344692934879411Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-69260
NC_011274:2909799:292527329252732925683411Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-69260
NC_011094:2913500:295493629549362955457522Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-68256
NC_009801:3013838:3031348303134830328081461Escherichia coli E24377A, complete genomeputative phage integrase family protein1e-56218
NC_011147:2814664:285833828583382858664327Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-54210
NC_006511:2819128:286280228628022863128327Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-54210
NC_013961:851044:856197856197857129933Erwinia amylovora, complete genomehypothetical protein2e-54210
NC_003198:2856596:290026029002602900586327Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-54208
NC_004631:2872192:288611728861172886443327Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-54208
NC_012880:3421500:3444978344497834464411464Dickeya dadantii Ech703, complete genomeintegrase family protein2e-37154
NC_004547:1174650:1180862118086211823311470Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase4e-37153
NC_014562:2563466:2598166259816625996351470Pantoea vagans C9-1 chromosome, complete genomePutative integrase/recombinase3e-35146