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Query: NC_012125:2938519:2982476 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2982476, End: 2983144, Length: 669

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2867766:291049129104912911159669Salmonella enterica subsp. enterica serovar Gallinarum/pullorummembrane protein4e-117420
NC_011294:2919906:293322729332272933895669Salmonella enterica subsp. enterica serovar Enteritidis strmembrane protein4e-117420
NC_011274:2909799:292403129240312924699669Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-117420
NC_011205:3078732:309295830929583093626669Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-117420
NC_011080:2982346:302671530267153027383669Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-117420
NC_011149:2912219:295862329586232959291669Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein4e-117420
NC_006905:2987863:300209430020943002762669Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein6e-117419
NC_010102:2967464:301318630131863013854669Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-116419
NC_014931:4210029:421002942100294210748720Variovorax paradoxus EPS chromosome, complete genomehypothetical protein7e-1270.5