Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2969157 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2969157, End: 2970167, Length: 1011

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2867766:2897170289717028981801011Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsurface presentation of antigens protein (associated with type III secretion and virulence)1e-171602
NC_011294:2919906:2919906291990629209161011Salmonella enterica subsp. enterica serovar Enteritidis strsurface presentation of antigens protein1e-171602
NC_011274:2909799:2910710291071029117201011Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91surface presentation of antigens protein1e-171602
NC_011149:2912219:2943772294377229447821011Salmonella enterica subsp. enterica serovar Agona str. SL483,antigen presentation protein SpaN4e-171600
NC_006905:2987863:2988774298877429897841011Salmonella enterica subsp. enterica serovar Choleraesuis strsurface presentation of antigens; secretory proteins4e-171600
NC_011080:2982346:3011750301175030127601011Salmonella enterica subsp. enterica serovar Newport str. SL254,antigen presentation protein SpaN3e-170598
NC_006511:2819128:2849782284978228507921011Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCantigen presentation protein SpaN3e-170598
NC_011147:2814664:2845318284531828463281011Salmonella enterica subsp. enterica serovar Paratyphi A strantigen presentation protein SpaN3e-170598
NC_011205:3078732:3079643307964330806531011Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853antigen presentation protein SpaN2e-170598
NC_003197:3005842:3035246303524630362561011Salmonella typhimurium LT2, complete genomeneedle length control protein5e-170597
NC_016810:3028421:3057822305782230588321011Salmonella enterica subsp. enterica serovar Typhimurium strsurface presentation of antigens protein (associated with type III secretion and virulence)5e-170597
NC_016856:3026426:3055483305548330564931011Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle length control protein5e-170597
NC_016857:3028421:3057822305782230588321011Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle length control protein5e-170597
NC_016860:3029272:3058676305867630596861011Salmonella enterica subsp. enterica serovar Typhimurium strneedle length control protein5e-170597
NC_016863:2974333:3003736300373630047461011Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle length control protein5e-170597
NC_017046:3027161:3056562305656230575721011Salmonella enterica subsp. enterica serovar Typhimurium str. 798surface presentation of antigens protein (associated with type III secretion and virulence)5e-170597
NC_010102:2967464:2998228299822829992381011Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-170597
NC_011083:3009760:3009760300976030107701011Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,antigen presentation protein SpaN6e-170596
NC_016832:2859491:2860402286040228614121011Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Surface presentation of antigens protein spaN3e-169594
NC_004631:2872192:2873103287310328741131011Salmonella enterica subsp. enterica serovar Typhi Ty2, completeantigen presentation protein SpaN3e-169594
NC_003198:2856596:2887246288724628882561011Salmonella enterica subsp. enterica serovar Typhi str. CT18,surface presentation of antigens protein (associated with type III secretion and virulence)3e-169594
NC_011094:2913500:2942442294244229434521011Salmonella enterica subsp. enterica serovar Schwarzengrund strantigen presentation protein SpaN1e-168592