Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2964809 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2964809, End: 2965306, Length: 498

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:3027161:305221430522143052711498Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion-associated chaperone1e-94344
NC_011094:2913500:293809429380942938591498Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion low calcium response chaperone LcrH/SycD1e-94344
NC_006511:2819128:284543428454342845931498Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCunknown function1e-94344
NC_011149:2912219:293942429394242939921498Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion low calcium response chaperone LcrH/SycD1e-94344
NC_006905:2960260:298442629844262984923498Salmonella enterica subsp. enterica serovar Choleraesuis strsurface presentation of antigens; secretory proteins1e-94344
NC_003197:3005842:303089830308983031395498Salmonella typhimurium LT2, complete genomesecretion chaperone1e-94344
NC_004631:2842453:286875528687552869252498Salmonella enterica subsp. enterica serovar Typhi Ty2, completeunknown function1e-94344
NC_011080:2982346:300740230074023007899498Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion low calcium response chaperone LcrH/SycD1e-94344
NC_010102:2967464:299388029938802994377498Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-94344
NC_003198:2856596:288289828828982883395498Salmonella enterica subsp. enterica serovar Typhi str. CT18,unknown function1e-94344
NC_011147:2814664:284097028409702841467498Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-94344
NC_011205:3050235:307529530752953075792498Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion low calcium response chaperone LcrH/SycD1e-94344
NC_011274:2881306:290636229063622906859498Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-94344
NC_016863:2974333:299938829993882999885498Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secretion chaperone1e-94344
NC_016860:3029272:305432830543283054825498Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion low calcium response chaperone LcrH/SycD1e-94344
NC_016857:3028421:305347430534743053971498Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74chaperone protein SicA1e-94344
NC_016856:3026426:305113530511353051632498Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecretion chaperone1e-94344
NC_016832:2829767:285605428560542856551498Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-94344
NC_016831:2867766:289282228928222893319498Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-94344
NC_016810:3028421:305347430534743053971498Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion-associated chaperone1e-94344
NC_015761:2726000:275049727504972750994498Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-94344
NC_011294:2890500:291555829155582916055498Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-94344
NC_010660:86445:108269108269108736468Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencechaperone protein IpgC1e-50198
NC_013961:851044:875564875564876109546Erwinia amylovora, complete genomeType III secretion chaperone SpaT4e-44176
NC_013971:2876733:289519128951912895736546Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein4e-44176
NC_012214:2221702:223997922399792240536558Erwinia pyrifoliae Ep1/96, complete genomeType III secretion chaperone3e-40164
NC_010694:2971170:298907229890722989599528Erwinia tasmaniensis, complete genomeType III secretion chaperone4e-40163
NC_010694:2138000:215257221525722153087516Erwinia tasmaniensis, complete genomeType III secretion chaperone7e-40162
NC_013961:1622616:165058016505801651137558Erwinia amylovora, complete genomeType III secretion chaperone SpaT1e-38158
NC_013971:1660144:168810716881071688664558Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system chaperone protein1e-38158
NC_011751:4293966:430138243013824301879498Escherichia coli UMN026 chromosome, complete genomeputative type III secretion chaperone5e-33140
NC_011750:4390000:441960144196014420098498Escherichia coli IAI39 chromosome, complete genomeputative type III secretion chaperone5e-33139
NC_013722:1689125:172702117270211727536516Xanthomonas albilineans, complete genomeprobable xsa-invasion chaperone protein1e-31135
NC_011750:3407500:342004534200453420536492Escherichia coli IAI39 chromosome, complete genomeputative chaperone1e-26118
NC_011751:3285646:329813432981343298625492Escherichia coli UMN026 chromosome, complete genomeputative chaperone5e-26116
NC_013353:3474077:348632434863243486815492Escherichia coli O103:H2 str. 12009, complete genomechaperone5e-25113
AP010958:3474077:348632434863243486815492Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted chaperone5e-25113
NC_007384:3151344:316459831645983165089492Shigella sonnei Ss046, complete genomehypothetical protein1e-24112
CU928145:3196173:320842132084213208912492Escherichia coli 55989 chromosome, complete genomeputative chaperone1e-24112
NC_011748:3196173:320842132084213208912492Escherichia coli 55989, complete genomeputative chaperone1e-24112
CP002185:3167738:318136931813693181860492Escherichia coli W, complete genometype III secretion-associated chaperone1e-24112
NC_010468:906957:928709928709929200492Escherichia coli ATCC 8739, complete genomeTetratricopeptide TPR_31e-24112
CP002516:903241:924216924216924707492Escherichia coli KO11, complete genomeTetratricopeptide TPR_3 repeat-containing protein1e-24112
NC_009800:2995958:300982330098233010314492Escherichia coli HS, complete genometetratricopeptide repeat protein1e-24112
NC_009801:3175714:318796231879623188453492Escherichia coli E24377A, complete genometetratricopeptide repeat protein1e-24112
NC_011415:3217796:323004432300443230535492Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-24112
NC_012759:2862807:287643828764382876929492Escherichia coli BW2952 chromosome, complete genomeputative chaperone7e-25112
NC_010473:3069529:308316030831603083651492Escherichia coli str. K-12 substr. DH10B, complete genomepredicted chaperone7e-25112
NC_000913:2975659:298929029892902989781492Escherichia coli K12, complete genomepredicted chaperone7e-25112
AC_000091:2976293:298992429899242990415492Escherichia coli W3110 DNA, complete genomepredicted chaperone7e-25112
NC_016902:903241:924216924216924707492Escherichia coli KO11FL chromosome, complete genomeTetratricopeptide TPR_3 repeat-containing protein1e-24112
NC_016822:3282654:329733532973353297826492Shigella sonnei 53G, complete genomeTetratricopeptide TPR_3 repeat-containing protein1e-24112
NC_002655:3769643:378120837812083781699492Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-24111
NC_002695:3702344:371390937139093714400492Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-24111
NC_011353:3805819:381830638183063818797492Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-24111
NC_013008:3761467:377303237730323773523492Escherichia coli O157:H7 str. TW14359 chromosome, complete genomechaperone2e-24111
NC_013941:3540420:355198435519843552475492Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-24111
NC_013361:3867558:387980638798063880297492Escherichia coli O26:H11 str. 11368 chromosome, complete genomechaperone2e-24111
NC_011741:3030324:304257230425723043063492Escherichia coli IAI1 chromosome, complete genomeputative chaperone5e-24110
CU928160:3030324:304257230425723043063492Escherichia coli IAI1 chromosome, complete genomeputative chaperone5e-24110
NC_020418:14965:258792587926364486Morganella morganii subsp. morganii KT, complete genomeputative type III secretion chaperone6e-1683.2
NC_013364:3552284:356473335647333565029297Escherichia coli O111:H- str. 11128, complete genome2e-1271.6
NC_008011:1394777:141913214191321419671540Lawsonia intracellularis PHE/MN1-00, complete genomeregulatory protein PcrH1e-1168.9
NC_012962:1189021:120659012065901207099510Photorhabdus asymbiotica, complete genomeyopb/d chaperone sycd4e-0857.4
NC_005126:4423964:442746244274624427965504Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0755.8
NC_013361:5319497:534059353405935341048456Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS chaperone CesD1e-0652.4
NC_013353:3669500:370283237028323703287456Escherichia coli O103:H2 str. 12009, complete genomechaperone CesD1e-0652.4
AP010958:3669500:370283237028323703287456Escherichia coli O103:H2 str. 12009 DNA, complete genomechaperone CesD1e-0652.4