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Query: NC_012125:2938519:2961768 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2961768, End: 2962997, Length: 1230

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2867766:2889781288978128910101230Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein0737
NC_010102:2967464:2990839299083929920681230Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0736
NC_003197:3005842:3027857302785730290861230Salmonella typhimurium LT2, complete genometranslocation machinery component0736
NC_006905:2960260:2981385298138529826141230Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein0736
NC_011080:2982346:3004361300436130055901230Salmonella enterica subsp. enterica serovar Newport str. SL254,0736
NC_011094:2913500:2935053293505329362821230Salmonella enterica subsp. enterica serovar Schwarzengrund strcell invasion protein SipC0736
NC_011205:3050235:3072254307225430734831230Salmonella enterica subsp. enterica serovar Dublin str. CT_020218530736
NC_011274:2881306:2903321290332129045501230Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein0736
NC_011294:2890500:2912517291251729137461230Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein0736
NC_017046:3027161:3049173304917330504021230Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein0736
NC_016863:2974333:2996347299634729975761230Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1translocation machinery component0736
NC_016860:3029272:3051287305128730525161230Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein0736
NC_016857:3028421:3050433305043330516621230Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74translocation machinery component0736
NC_016856:3026426:3048094304809430493231230Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranslocation machinery component0736
NC_016810:3028421:3050433305043330516621230Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein0736
NC_011149:2912219:2936383293638329376121230Salmonella enterica subsp. enterica serovar Agona str. SL483,0735
NC_003198:2856596:2879857287985728810861230Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein0731
NC_004631:2842453:2865714286571428669431230Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein0731
NC_016832:2829767:2853013285301328542421230Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipC0731
NC_006511:2819128:2842393284239328436221230Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein0731
NC_011147:2814664:2837929283792928391581230Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein0731
NC_010067:84093:8590485904871331230Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0686
NC_015761:2726000:2747456274745627486851230Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein0683
NC_010660:86445:1054101054101065011092Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceinvasin protein IpaC8e-27121