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Query: NC_012125:2938519:2958590 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2958590, End: 2960602, Length: 2013

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2960260:2978207297820729802642058Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein01234
NC_003197:3005842:3024679302467930267362058Salmonella typhimurium LT2, complete genomesecreted effector protein01229
NC_016810:3028421:3047255304725530493122058Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein01229
NC_016857:3028421:3047255304725530493122058Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74secreted effector protein01229
NC_016860:3029272:3048109304810930501662058Salmonella enterica subsp. enterica serovar Typhimurium strsecreted effector protein01229
NC_016863:2974333:2993169299316929952262058Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secreted effector protein01229
NC_017046:3027161:3045995304599530480072013Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein01229
NC_010102:2967464:2987661298766129896732013Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein01228
NC_011205:3050235:3069076306907630710882013Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cell invasion protein SipA01227
NC_011080:2982346:3001183300118330031952013Salmonella enterica subsp. enterica serovar Newport str. SL254,cell invasion protein SipA01227
NC_016856:3026426:3044916304491630469732058Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecreted effector protein01227
NC_011294:2890500:2909339290933929113962058Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein01226
NC_011274:2881306:2900143290014329022002058Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein01221
NC_011149:2912219:2933205293320529352172013Salmonella enterica subsp. enterica serovar Agona str. SL483,cell invasion protein SipA01206
NC_016832:2829767:2849845284984528518572013Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipA01205
NC_004631:2842453:2862546286254628646032058Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein01205
NC_003198:2856596:2876689287668928787462058Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein (function unknown)01205
NC_006511:2819128:2839225283922528412822058Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein (function unknown)01203
NC_011147:2814664:2834761283476128368182058Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein01203
NC_011094:2913500:2931884293188429338962013Salmonella enterica subsp. enterica serovar Schwarzengrund strcell invasion protein SipA01181
NC_016831:2867766:2886603288660328885431941Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein01179
NC_010067:84093:8827988279902611983Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0971
NC_015761:2726000:2744227274422727463442118Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein0862
NC_010660:86445:1024511024511043521902Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceinvasin protein IpaA2e-20101