Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2958019 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2958019, End: 2958243, Length: 225

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:2856596:287611828761182876378261Salmonella enterica subsp. enterica serovar Typhi str. CT18,doubtful CDS found within S. typhi pathogenicity island7e-38155
NC_006905:2960260:297763629776362977896261Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein7e-38155
NC_004631:2842453:286197528619752862235261Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-38155
NC_016856:3026426:304434530443453044605261Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein2e-37154
NC_016860:3029272:304753830475383047798261Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-37154
NC_016863:2974333:299259829925982992858261Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-37154
NC_016832:2829767:284927428492742849498225Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,CRISPR-associated helicase Cas31e-37154
NC_011149:2912219:293263429326342932858225Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein4e-37153
NC_010102:2967464:298709029870902987314225Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-37153
NC_011205:3050235:306850530685053068729225Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-37153
NC_016831:2867766:288603228860322886256225Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-37153
NC_016857:3028421:304668430466843046908225Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-37153
NC_006511:2819128:283865428386542838914261Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCdoubtful CDS found within S. typhi pathogenicity island3e-37153
NC_011147:2814664:283419028341902834450261Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-37153
NC_011094:2913500:293131329313132931537225Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-37152
NC_011080:2982346:300061230006123000836225Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein5e-37152
NC_010067:84093:905729057290823252Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-25113