Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2948336 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2948336, End: 2948839, Length: 504

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:3027161:303574130357413036244504Salmonella enterica subsp. enterica serovar Typhimurium str. 798oxygen-regulated invasion protein5e-77286
NC_006905:2960260:296795229679522968530579Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-76285
NC_006511:2819128:282897128289712829549579Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCoxygen-regulated invasion protein1e-76285
NC_010102:2967464:297740729774072977985579Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-76285
NC_011083:2980356:298893929889392989517579Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus protein OrgA/MxiK1e-76285
NC_011147:2814664:282450728245072825085579Salmonella enterica subsp. enterica serovar Paratyphi A stroxygen-regulated invasion protein1e-76285
NC_011205:3050235:305881630588163059394579Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus protein OrgA/MxiK1e-76285
NC_016831:2867766:287634828763482876926579Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcell invasion protein1e-76285
NC_016860:3029272:303785530378553038433579Salmonella enterica subsp. enterica serovar Typhimurium strcell invasion protein1e-76285
NC_003197:3005842:301442530144253015024600Salmonella typhimurium LT2, complete genomeneedle complex assembly protein7e-77285
NC_011274:2881306:288988928898892890488600Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91cell invasion protein7e-77285
NC_011294:2890500:289908428990842899683600Salmonella enterica subsp. enterica serovar Enteritidis strcell invasion protein7e-77285
NC_016810:3028421:303700130370013037600600Salmonella enterica subsp. enterica serovar Typhimurium stroxygen-regulated invasion protein7e-77285
NC_016856:3026426:303466230346623035261600Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex assembly protein7e-77285
NC_016857:3028421:303700130370013037600600Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex assembly protein7e-77285
NC_016863:2974333:298291529829152983514600Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex assembly protein7e-77285
NC_004631:2842453:285229628522962852874579Salmonella enterica subsp. enterica serovar Typhi Ty2, completeoxygen-regulated invasion protein2e-76284
NC_003198:2856596:286643928664392867017579Salmonella enterica subsp. enterica serovar Typhi str. CT18,cell invasion protein2e-76284
NC_016832:2829767:283959528395952840173579Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Oxygen-regulated invasion protein orgA2e-76284
NC_011080:2982346:299092929909292991507579Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein OrgA/MxiK2e-76284
NC_011094:2913500:292163129216312922209579Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus protein OrgA/MxiK1e-75281
NC_011149:2912219:292295329229532923531579Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein OrgA/MxiK1e-75281
NC_010067:84093:9949199491100069579Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-67253
NC_015761:2726000:273465427346542735253600Salmonella bongori NCTC 12419, complete genomecell invasion protein6e-67253