Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2947250 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2947250, End: 2947612, Length: 363

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:2890500:289799828979982898450453Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein7e-66248
NC_011274:2881306:288880328888032889255453Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-66248
NC_006905:2960260:296686629668662967318453Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein7e-66248
NC_004631:2842453:285120028512002851652453Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein found within S. typhi pathogenicity island 13e-65246
NC_003198:2856596:286534328653432865795453Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein found within S. typhi pathogenicity island 13e-65246
NC_006511:2819128:282787528278752828327453Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein found within S. typhi pathogenicity island 12e-65246
NC_011094:2913500:292053529205352920987453Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-65246
NC_011147:2814664:282341128234112823863453Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-65246
NC_011080:2982346:298984329898432990205363Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein2e-65246
NC_011083:2980356:298785329878532988215363Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein2e-65246
NC_010102:2967464:297632129763212976683363Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-65246
NC_011205:3050235:305773030577303058092363Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-65246
NC_016831:2867766:287526228752622875624363Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-65246
NC_003197:3005842:301333930133393013791453Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein6e-65245
NC_016810:3028421:303591530359153036367453Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-65245
NC_016856:3026426:303357630335763034028453Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein6e-65245
NC_016857:3028421:303591530359153036367453Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein6e-65245
NC_016863:2974333:298182929818292982281453Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-65245
NC_016832:2829767:283849928384992838861363Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Oxygen-regulated invasion protein OrgC8e-65244
NC_017046:3027161:303465530346553035017363Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-64244
NC_016860:3029272:303676930367693037131363Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein2e-64244
NC_011149:2912219:292185729218572922219363Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-64242
NC_010067:84093:100712100712101170459Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-52204
NC_015761:2726000:273355927335592734011453Salmonella bongori NCTC 12419, complete genomehypothetical protein4e-50196