Pre_GI: BLASTP Hits

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Query: NC_012125:2687980:2700339 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2700339, End: 2700998, Length: 660

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:1880174:189299018929901893649660Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-108391
NC_011149:1035990:104382410438241044483660Salmonella enterica subsp. enterica serovar Agona str. SL483,inner membrane protein YccA2e-108391
NC_004631:1881214:189614018961401896799660Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-108391
NC_010102:2020762:203311020331102033769660Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-108391
NC_006511:1808815:182339718233971824056660Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-108391
NC_011083:1173802:117899311789931179652660Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YccA2e-108391
NC_003198:1078113:108401410840141084673660Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-108391
NC_011094:1127983:113317411331741133833660Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-108391
NC_011147:1802535:181858018185801819239660Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-108391
NC_011205:1147556:115274711527471153406660Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-108391
NC_016831:1950650:196300719630071963666660Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-108391
NC_003197:1170746:117426811742681174927660Salmonella typhimurium LT2, complete genomeputative transport protein7e-108389
NC_016856:1128715:113261211326121133271660Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-108389
NC_016857:1126693:113059011305901131249660Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Inner membrane protein yccA7e-108389
NC_016860:1168431:117195311719531172612660Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-108389
NC_016863:1128381:113190311319031132562660Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein7e-108389
NC_017046:1127325:113084711308471131506660Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-108389
NC_010067:1829041:185059018505901851249660Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-107388
NC_016514:1627664:163109416310941631753660Enterobacter cloacae EcWSU1 chromosome, complete genomeinner membrane protein YccA4e-107387
NC_013716:1138441:114210111421011142760660Citrobacter rodentium ICC168, complete genomeputative outer membrane protein6e-106383
NC_014618:2989000:300217930021793002838660Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein7e-105379
NC_020181:2097066:212190321219032122562660Enterobacter aerogenes EA1509E, complete genomePutative TEGT family carrier/transport protein1e-103375
NC_011274:1057887:106140910614091061987579Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-101368
NC_011294:1048223:105212010521201052698579Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-101368
NC_016810:1126693:113059011305901131168579Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-101366
NC_013421:3093995:310895731089573109616660Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function UPF00053e-86317
NC_012880:3125261:314263031426303143289660Dickeya dadantii Ech703, complete genomeprotein of unknown function UPF00053e-84311
NC_007712:1712667:171405517140551714714660Sodalis glossinidius str. 'morsitans', complete genomeputative transport protein3e-77287
NC_006512:696000:715527715527716195669Idiomarina loihiensis L2TR, complete genomeIntegral membrane protein4e-56218
NC_012660:4149487:416385841638584164529672Pseudomonas fluorescens SBW25 chromosome, complete genomeputative carrier/transport protein2e-54212
NC_014532:1873169:187700818770081877676669Halomonas elongata DSM 2581, complete genomeK068901e-52206
NC_015733:3736104:382410738241073824778672Pseudomonas putida S16 chromosome, complete genomehypothetical protein2e-52205
NC_002947:4484824:450153645015364502207672Pseudomonas putida KT2440, complete genomehypothetical protein2e-52205
NC_009512:2108686:211285521128552113526672Pseudomonas putida F1, complete genomeprotein of unknown function UPF00052e-52205
NC_017986:4790482:479465147946514795322672Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-52205
NC_008027:2331617:233672823367282337399672Pseudomonas entomophila L48, complete genomehypothetical protein2e-52205
NC_004129:4333302:433753943375394338210672Pseudomonas fluorescens Pf-5, complete genomehypothetical protein5e-52204
NC_004344:589375:613618613618614277660Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-51201
NC_015222:386000:405231405231405902672Nitrosomonas sp. AL212 chromosome, complete genomehypothetical protein2e-47188
NC_015731:402280:409219409219409890672Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein4e-46184
NC_007484:1823751:184857518485751849243669Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein8e-45180
NC_009749:879174:894859894859895518660Francisella tularensis subsp. holarctica FTA, complete genomecarrier/transport protein1e-40166
NC_007880:877317:893098893098893784687Francisella tularensis subsp. holarctica, complete genomehypothetical protein1e-40166
NC_008369:880975:896755896755897441687Francisella tularensis subsp. holarctica OSU18, complete genomepossible TEGT family testis enhanced gene transfer tranporter1e-40166
NC_016937:650290:666504666504667190687Francisella tularensis subsp. tularensis TI0902 chromosome,Carrier transport protein6e-40164
NC_016933:726197:742411742411743097687Francisella tularensis TIGB03 chromosome, complete genomeCarrier transport protein6e-40164
NC_006570:650291:666505666505667191687Francisella tularensis subsp. tularensis Schu 4, complete genomehypothetical protein6e-40164
NC_008245:650243:666457666457667143687Francisella tularensis subsp. tularensis FSC 198, complete genomehypothetical protein6e-40164
NC_010336:1670000:168622016862201686906687Francisella philomiragia subsp. philomiragia ATCC 25017, completehypothetical protein7e-38157
NC_004757:1089057:110510011051001105795696Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein1e-35149
NC_014394:1989418:200802620080262008715690Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein1e-34145
NC_014910:2585747:260358226035822604271690Alicycliphilus denitrificans BC chromosome, complete genomehypothetical protein4e-28124
NC_011992:1505106:150713115071311507823693Acidovorax ebreus TPSY, complete genomeprotein of unknown function UPF00057e-27120
NC_010524:3094303:311232731123273113022696Leptothrix cholodnii SP-6, complete genomeprotein of unknown function UPF00052e-25115
NC_014752:324832:326908326908327591684Neisseria lactamica ST-640, complete genomeintegral membrane protein7e-21100
NC_011206:1379068:139775613977561398448693Acidithiobacillus ferrooxidans ATCC 53993, complete genomeprotein of unknown function UPF00054e-1994.7
NC_014166:3072703:308933730893373090032696Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein2e-1892
NC_009802:1886000:190738719073871908085699Campylobacter concisus 13826, complete genomeputative ferric receptor CfrA7e-1684
NC_009715:1923676:192367619236761924386711Campylobacter curvus 525.92 chromosome, complete genomeribonuclease 38e-1684
NC_009662:1849239:186188318618831862602720Nitratiruptor sp. SB155-2, complete genomehypothetical protein2e-1376.3
NC_009484:489398:494952494952495722771Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein2e-0859.7
NC_015186:597695:603899603899604669771Acidiphilium multivorum AIU301, complete genomehypothetical protein2e-0859.7
NC_009725:692237:719255719255719899645Bacillus amyloliquefaciens FZB42, complete genomeYetJ1e-0756.2
NC_019842:680000:708962708962709606645Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein2e-0756.2