Pre_GI: BLASTP Hits

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Query: NC_012125:2687980:2699857 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2699857, End: 2699944, Length: 88

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1127325:11319011131901113198888Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Ser3e-0960.5
NC_003198:1078113:10850681085068108515588Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Ser3e-0960.5
NC_004631:1881214:18956581895658189574588Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Ser3e-0960.5
NC_011745:1055354:10748461074846107493388Escherichia coli ED1a chromosome, complete genometRNA-Ser3e-0960.5
NC_014618:2989000:30000553000055300014288Enterobacter cloacae SCF1 chromosome, complete genometRNA-Ser3e-0960.5
NC_016514:1627664:16337961633796163388388Enterobacter cloacae EcWSU1 chromosome, complete genometRNA-Ser3e-0960.5
NC_016832:1880174:18925081892508189259588Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Ser3e-0960.5
NC_016856:1128715:11336661133666113375388Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Ser3e-0960.5
NC_016857:1126693:11316441131644113173188Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Ser3e-0960.5
NC_016860:1168431:11730071173007117309488Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Ser3e-0960.5
NC_010102:2020762:20326312032631203271585Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Ser9e-0958.9
NC_006511:1808815:18229181822918182300285Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtRNA-Ser9e-0958.9
NC_013716:1138441:11430351143035114311985Citrobacter rodentium ICC168, complete genometRNA-Ser9e-0958.9
NC_010067:1829041:18501021850102185018685Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Ser9e-0958.9
NC_011147:1802535:18181011818101181818585Salmonella enterica subsp. enterica serovar Paratyphi A strtRNA-Ser9e-0958.9
NC_011274:1057887:10624631062463106254785Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Ser9e-0958.9
NC_011294:1048223:10531741053174105325885Salmonella enterica subsp. enterica serovar Enteritidis strtRNA-Ser9e-0958.9
NC_016810:1126693:11316441131644113172885Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Ser9e-0958.9
NC_016831:1950650:19625281962528196261285Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Ser9e-0958.9
NC_007947:1556437:15746781574678157476588Methylobacillus flagellatus KT, complete genometRNA-Ser1e-0652.4