Pre_GI: BLASTP Hits

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Query: NC_012125:2646792:2650820 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2650820, End: 2650907, Length: 88

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1164176:11809541180954118104188Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Ser5e-1063.2
NC_000913:1087062:10967881096788109687588Escherichia coli K12, complete genometRNA-Ser5e-1063.2
NC_003198:1117687:11350181135018113510588Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Ser5e-1063.2
NC_015663:3466471:34956913495691349577888Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Ser5e-1063.2
NC_015968:1709680:17128581712858171294588Enterobacter asburiae LF7a chromosome, complete genometRNA-Ser5e-1063.2
NC_006905:1186895:12048281204828120491588Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Ser5e-1063.2
NC_008258:1076922:10918251091825109191288Shigella flexneri 5 str. 8401, complete genometRNA-Ser5e-1063.2
AC_000091:1083798:10978061097806109789388Escherichia coli W3110 DNA, complete genometRNA-Ser5e-1063.2
NC_014121:2629075:26503942650394265048188Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetRNA-Ser5e-1063.2
NC_014121:2629075:26474642647464264755188Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetRNA-Ser5e-1063.2
NC_015663:3466471:34989233498923349901088Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Ser5e-1063.2
NC_016860:1205282:12224281222428122251588Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Ser5e-1063.2
NC_016857:1163919:11808811180881118096888Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Ser5e-1063.2
NC_016856:1165941:11829031182903118299088Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Ser5e-1063.2
NC_016832:1838220:18431131843113184320088Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Ser5e-1063.2
NC_016514:1701273:17026641702664170275188Enterobacter cloacae EcWSU1 chromosome, complete genometRNA-Ser5e-1063.2
NC_004631:1842050:18460781846078184616588Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Ser5e-1063.2
NC_004337:1065609:10724451072445107253288Shigella flexneri 2a str. 301, complete genometRNA-Ser5e-1063.2
NC_010468:2809125:28122602812260281234788Escherichia coli ATCC 8739, complete genometRNA-Ser5e-1063.2
NC_010067:1782998:17870081787008178709285Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Ser2e-0961.2
NC_007946:1119000:11425351142535114261985Escherichia coli UTI89, complete genometRNA-Ser2e-0961.2
NC_010102:1979742:19837721983772198385685Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Ser2e-0961.2
NC_013716:1178383:11948911194891119497585Citrobacter rodentium ICC168, complete genometRNA-Ser2e-0961.2
NC_006511:1770000:17740481774048177413285Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtRNA-Ser2e-0961.2
NC_011147:1763681:17692311769231176931585Salmonella enterica subsp. enterica serovar Paratyphi A strtRNA-Ser2e-0961.2
NC_011294:2009388:20138602013860201394485Salmonella enterica subsp. enterica serovar Enteritidis strtRNA-Ser2e-0961.2
NC_016810:1163919:11808841180884118096885Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Ser2e-0961.2
NC_016831:947281:98850998850998859385Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Ser2e-0961.2
NC_009348:2631759:26385762638576263866388Aeromonas salmonicida subsp. salmonicida A449, complete genometRNA-Ser2e-0858.2
NC_012691:2097287:21123092112309211239688Tolumonas auensis DSM 9187, complete genometRNA-Ser2e-0858.2
NC_008570:1986466:19892141989214198930188Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genometRNA-Ser2e-0858.2
NC_016745:2028424:20683122068312206839988Oceanimonas sp. GK1 chromosome, complete genometRNA-Ser3e-0857
NC_009778:2227627:22827842282784228286885Enterobacter sakazakii ATCC BAA-894, complete genometRNA-Ser6e-0856.2
NC_009778:2227627:22796902279690227977485Enterobacter sakazakii ATCC BAA-894, complete genometRNA-Ser6e-0856.2
NC_002505:1892430:18956921895692189577988Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetRNA-Ser7e-0752.8
NC_013456:2528284:25387152538715253880288Vibrio sp. Ex25 chromosome 1, complete genometRNA-Ser7e-0752.8
NC_004603:1115134:11210821121082112116988Vibrio parahaemolyticus RIMD 2210633 chromosome I, completetRNA-Ser7e-0752.8
NC_009457:1444449:14488051448805144889288Vibrio cholerae O395 chromosome 2, complete sequencetRNA-Ser7e-0752.8
NC_012578:1838470:18428261842826184291388Vibrio cholerae M66-2 chromosome I, complete sequencetRNA-Ser7e-0752.8
NC_016445:1363831:13670931367093136718088Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetRNA-Ser7e-0752.8
NC_016944:1937645:19420011942001194208888Vibrio cholerae IEC224 chromosome I, complete sequencetRNA-Ser7e-0752.8
NC_017270:1755552:17598991759899175998385Vibrio cholerae LMA3984-4 chromosome chromosome I, completetRNA-Ser2e-0650.8
NC_008577:2115440:21185282118528211861588Shewanella sp. ANA-3 chromosome 1, complete sequencetRNA-Ser4e-0650.1
NC_008321:1993541:19995431999543199963088Shewanella sp. MR-4, complete genometRNA-Ser4e-0650.1
NC_008322:2077628:20807102080710208079788Shewanella sp. MR-7, complete genometRNA-Ser4e-0650.1