Pre_GI: BLASTP Hits

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Query: NC_012125:2646792:2647663 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2647663, End: 2648157, Length: 495

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:1186895:120754212075421208072531Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-87320
NC_010102:1979742:198061419806141981138525Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-87320
NC_011083:1216500:123184112318411232335495Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YcdZ6e-87319
NC_016832:1838220:183995618399561840450495Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein ycdZ6e-87319
NC_006511:1770000:177089017708901771420531Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-87319
NC_011147:1763681:176607317660731766603531Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-87319
NC_017046:1164176:118367511836751184199525Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-87319
NC_003198:1117687:113773211377321138262531Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-87319
NC_004631:1842050:184292118429211843451531Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-87319
NC_016810:1163919:118359611835961184126531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-87319
NC_016856:1165941:118561811856181186148531Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-87319
NC_016857:1163919:118359611835961184126531Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-87319
NC_016863:1165232:118490911849091185439531Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-87319
NC_011094:1166271:118578111857811186293513Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein7e-87318
NC_016831:947281:990494990494991018525Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-86318
NC_011294:2009388:201070320107032011233531Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-86318
NC_011205:2137696:213901121390112139523513Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-86318
NC_011080:1209935:122927912292791229773495Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane protein YcdZ2e-86317
NC_003197:1207597:122745612274561227986531Salmonella typhimurium LT2, complete genomeputative inner membrane protein5e-86316
NC_016860:1205282:122517812251781225672495Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein YcdZ5e-86316
NC_010067:1782998:178385117838511784345495Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-85313
NC_015968:1709680:171560017156001716091492Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein2e-74277
NC_010468:2809125:280912528091252809646522Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF10972e-74277
NC_004337:1065609:107514710751471075668522Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-74276
NC_008258:1076922:109450910945091095048540Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-73273
NC_000913:1087062:109951910995191100010492Escherichia coli K12, complete genomepredicted inner membrane protein1e-72271
AC_000091:1083798:110053711005371101028492Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein1e-72271
NC_013716:1178383:119764711976471198177531Citrobacter rodentium ICC168, complete genomehypothetical protein1e-70265
NC_016514:1701273:170536817053681705898531Enterobacter cloacae EcWSU1 chromosome, complete genomeinner membrane protein YcdZ2e-70264
NC_015663:3466471:350172135017213502203483Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein8e-70262
NC_014121:2629075:264431826443182644740423Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-60229
NC_015224:3191000:319178131917813192272492Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-59228
NC_008800:1497746:151399715139971514488492Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-59226
NC_009778:2227627:223568722356872236163477Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-40163
NC_015425:405058:408528408528408995468Clostridium botulinum BKT015925 chromosome, complete genomeglutathione-regulated potassium-efflux system protein1e-24112