Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1653296 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1653296, End: 1654012, Length: 717

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2235607:223920022392002239916717Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-118424
NC_011149:2179592:218459721845972185313717Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-115414
NC_016832:799764:818496818496819191696Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-105380
NC_003198:2179688:218468721846872185394708Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-105380
NC_004631:799810:818542818542819249708Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-105380
NC_006511:792543:811344811344812039696Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-104376
NC_011147:792489:811290811290811985696Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-104376
NC_008253:2198583:220553922055392206255717Escherichia coli 536, complete genomehypothetical protein7e-73273
NC_004431:2444972:245500624550062455722717Escherichia coli CFT073, complete genomehypothetical protein7e-73273
NC_004129:5204500:520842352084235209082660Pseudomonas fluorescens Pf-5, complete genomehypothetical protein3e-1375.5