Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1651174 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1651174, End: 1653285, Length: 2112

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2235607:2239927223992722420382112Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein01420
NC_016832:799764:8163748163748184852112Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein01412
NC_003198:2179688:2185405218540521875162112Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein01412
NC_004631:799810:8164208164208185312112Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein01412
NC_011149:2179592:2185324218532421874352112Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein01404
NC_006511:792543:8092228092228113332112Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein01400
NC_011147:792489:8091688091688112792112Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein01400
NC_008253:2198583:2203420220342022055282109Escherichia coli 536, complete genomehypothetical protein0945
NC_004431:2444972:2452887245288724550342148Escherichia coli CFT073, complete genomehypothetical protein0944
NC_010634:2252329:2255069225506922571802112Yersinia pseudotuberculosis PB1/+, complete genomeSel1 domain-containing protein1e-117424
NC_006155:2334122:2336862233686223389732112Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-117424
NC_010465:2428620:2440939244093924430502112Yersinia pseudotuberculosis YPIII, complete genomeSel1 domain protein repeat-containing protein2e-117423
NC_017154:2258228:2260968226096822630792112Yersinia pestis D106004 chromosome, complete genomehypothetical protein8e-117421
NC_014029:2335021:2347352234735223494632112Yersinia pestis Z176003 chromosome, complete genomehypothetical protein8e-117421
NC_008150:1543635:1546375154637515484862112Yersinia pestis Antiqua, complete genomehypothetical protein8e-117421
NC_003143:2258636:2261376226137622634872112Yersinia pestis CO92, complete genomehypothetical protein8e-117421
NC_009708:2392640:2404972240497224070832112Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-116421
NC_008149:1669921:1672661167266116747722112Yersinia pestis Nepal516, complete genomemembrane protein2e-116420
NC_005810:2043730:2046471204647120485822112Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein2e-116420
NC_004088:2541033:2553364255336425554752112Yersinia pestis KIM, complete genomehypothetical protein2e-116420
NC_009381:1258396:1269958126995812720692112Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-116420
NC_017265:2263347:2274322227432222764332112Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein2e-116420
NC_011983:1746000:1761161176116117631972037Agrobacterium radiobacter K84 chromosome 2, complete genomehypothetical protein1e-1275.5