Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1650450 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1650450, End: 1651169, Length: 720

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:2179592:218744021874402188159720Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein9e-131466
NC_006905:2235607:224204322420432242762720Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-129462
NC_011147:792489:808445808445809128684Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-125448
NC_006511:792543:808499808499809182684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-125448
NC_003198:2179688:218752121875212188240720Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-124443
NC_004631:799810:815696815696816415720Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-124443
NC_016832:799764:815650815650816255606Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-109394
NC_020064:3790472:379113737911373791844708Serratia marcescens FGI94, complete genomehypothetical protein6e-48190