Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1646183 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1646183, End: 1647049, Length: 867

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011748:4131924:413882441388244139075252Escherichia coli 55989, complete genome2e-0756.6
NC_011748:4131924:413744141374414137959519Escherichia coli 55989, complete genome4e-1685.5
CU928145:4131924:413744141374414137959519Escherichia coli 55989 chromosome, complete genomefragment of lyase containing HEAT-repeat (part 1)4e-1685.5
CU928145:4131924:413882441388244139075252Escherichia coli 55989 chromosome, complete genomefragment of lyase containing HEAT-repeat (part 2)2e-0756.6
NC_017030:6912830:692054569205456921366822Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein4e-0962.4
NC_012759:3648500:365268636526863653528843Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-45183
NC_012947:126596:142564142564143406843Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-45183
NC_011415:4006500:401139740113974012239843Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-45183
NC_012967:3696877:370103137010313701873843Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-45183
AP010958:4707712:471655547165554717397843Escherichia coli O103:H2 str. 12009 DNA, complete genomelyase containing HEAT-repeat2e-44179
NC_013353:4707712:471655547165554717397843Escherichia coli O103:H2 str. 12009, complete genomelyase containing HEAT-repeat2e-44179
CP002185:3964500:396932839693283970170843Escherichia coli W, complete genomelyase containing heat-repeat1e-45183
CP002185:794732:804021804021804863843Escherichia coli W, complete genomelyase containing heat-repeat1e-45183
CP002516:119935:135903135903136745843Escherichia coli KO11, complete genomePBS lyase HEAT domain protein repeat-containing protein1e-45183
NC_010468:111504:127646127646128488843Escherichia coli ATCC 8739, complete genomePBS lyase HEAT domain protein repeat-containing protein1e-45183
NC_016902:119935:135903135903136745843Escherichia coli KO11FL chromosome, complete genomePBS lyase HEAT domain-containing protein repeat-containing protein1e-45183
NC_009801:4073968:407950040795004080342843Escherichia coli E24377A, complete genomePBS lyase HEAT-like repeat protein1e-45183
NC_009800:3787320:379286837928683793710843Escherichia coli HS, complete genomePBS lyase HEAT-like repeat protein1e-45183
NC_008312:2798463:2821588282158828256194032Trichodesmium erythraeum IMS101, complete genomepeptidase C14, caspase catalytic subunit p202e-0653.1