Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1645741 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1645741, End: 1645974, Length: 234

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011274:1129686:1143020114302011471774158Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein6e-32135
NC_010468:1816359:1836693183669318404483756Escherichia coli ATCC 8739, complete genomeYD repeat protein9e-31132
NC_010468:2406387:2416103241610324199093807Escherichia coli ATCC 8739, complete genomeYD repeat protein8e-30129
CP002185:794732:7993277993278035614235Escherichia coli W, complete genome2e-29127
NC_012967:3696877:3696877369687737010104134Escherichia coli B str. REL606 chromosome, complete genomerhsA element core protein RshA3e-29126
NC_010468:111504:1285091285091326424134Escherichia coli ATCC 8739, complete genomeYD repeat protein3e-29127
AC_000091:3995233:4016988401698840212234236Escherichia coli W3110 DNA, complete genomerhsB element core protein RshB3e-29127
NC_012759:3648500:3648532364853236526654134Escherichia coli BW2952 chromosome, complete genomerhsA element core protein RshA3e-29127
NC_009801:4073968:4074805407480540790404236Escherichia coli E24377A, complete genomeprotein rhsB precursor4e-29126
CP002185:3964500:3964633396463339688684236Escherichia coli W, complete genomeType I RHS protein4e-29126
CP002516:119935:1372051372051414404236Escherichia coli KO11, complete genomeYD repeat protein4e-29126
NC_016902:119935:1372051372051414404236Escherichia coli KO11FL chromosome, complete genomeYD repeat protein4e-29126
NC_011415:4006500:4006702400670240109374236Escherichia coli SE11 chromosome, complete genomeRhs core protein4e-29126
NC_010468:3209326:3222525322252532267184194Escherichia coli ATCC 8739, complete genomeYD repeat protein6e-29125
NC_012967:3549880:3549880354988035541154236Escherichia coli B str. REL606 chromosome, complete genomerhsB element core protein RshB1e-28124
NC_012947:248000:2870612870612912964236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-28124
CU928145:4131924:4132761413276141367263966Escherichia coli 55989 chromosome, complete genomerhsB element core protein RshB2e-28124
AP010958:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009 DNA, complete genomeRhs core protein with extension2e-28124
NC_011748:4131924:4132761413276141367263966Escherichia coli 55989, complete genomerhsB element core protein RshB2e-28124
NC_013353:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009, complete genomeRhs core protein with extension2e-28124
NC_009800:3787320:3791487379148737928471361Escherichia coli HS, complete genome2e-27120
NC_013008:261226:2670692670692713014233Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-27119
NC_011353:261220:2670632670632712954233Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeRHS Repeat family protein4e-27119
NC_013941:261094:2670212670212712534233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome4e-27119
CU928160:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension7e-27119
NC_011741:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension7e-27119
NC_012947:126596:143427143427144299873Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRhs family protein-like protein9e-27118
NC_002655:261236:2670792670792712934215Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-26118
NC_011205:1227373:1229589122958912338064218Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-26118
NC_016831:1865681:1884050188405018873583309Salmonella enterica subsp. enterica serovar Gallinarum/pullorum2e-26117
NC_002695:261235:2670782670782712924215Escherichia coli O157:H7 str. Sakai, complete genomeRhsG core protein with extension2e-26117
NC_007384:278810:2810272810272852354209Shigella sonnei Ss046, complete genomerhs core protein with extension3e-26117
NC_007384:1763375:1771082177108217748853804Shigella sonnei Ss046, complete genomerhs core protein with extension5e-26116
NC_016822:1839739:1849435184943518536524218Shigella sonnei 53G, complete genomerhs core protein with extension1e-25115
NC_011274:1129686:1137806113780611411143309Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein3e-25113
NC_011149:1110642:1116901111690111210674167Salmonella enterica subsp. enterica serovar Agona str. SL483,protein RhsA8e-25112
NC_016822:267758:2786032786032828204218Shigella sonnei 53G, complete genomerhs core protein with extension9e-25112
NC_011741:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomeputative Rhs Core protein2e-24110
CU928160:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomePutative Rhs Core protein2e-24110
NC_008752:4086283:4089945408994540944174473Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein3e-24110
NC_007384:1763375:178013117801311780601471Shigella sonnei Ss046, complete genomeunknown protein associated with Rhs element2e-22103
NC_015138:4103457:4105200410520041096004401Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein3e-22103
NC_008752:4147715:4162182416218241672155034Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein1e-21101
NC_008752:4747376:4750529475052947555685040Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein4e-2199.8
NC_015138:4175831:4185824418582441908665043Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein8e-2095.5
NC_015563:334942:3422533422533468904638Delftia sp. Cs1-4 chromosome, complete genomeRHS repeat-associated core domain-containing protein3e-1270.9
NC_010002:4890192:4900303490030349048894587Delftia acidovorans SPH-1, complete genomeYD repeat protein3e-1270.5
NC_015563:2656628:2662684266268426671204437Delftia sp. Cs1-4 chromosome, complete genomeRHS repeat-associated core domain-containing protein1e-1168.9