Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1641556 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1641556, End: 1641975, Length: 420

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2235607:225123822512382251657420Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein8e-79291
NC_011147:792489:801872801872802291420Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-76281
NC_006511:792543:801926801926802345420Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-76281
NC_004631:799810:809218809218809637420Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-75279
NC_003198:2179688:219429921942992194718420Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-75279
NC_013282:2026083:204362220436222044029408Cronobacter turicensis, complete genomehypothetical protein1e-1891.7
NC_017060:125480:137560137560138009450Rahnella aquatilis HX2 plasmid PRA1, complete sequencehypothetical protein9e-1165.5
NC_015062:130359:140730140730141179450Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein9e-1165.5