Pre_GI: BLASTP Hits

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Query: NC_012125:1632150:1640282 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1640282, End: 1640899, Length: 618

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2235607:225231322523132252930618Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein8e-120429
NC_011149:2179592:219538221953822195999618Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein3e-118424
NC_011147:792489:800599800599801216618Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-116417
NC_006511:792543:800653800653801270618Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-116417
NC_004631:799810:807944807944808561618Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-115414
NC_003198:2179688:219537521953752195992618Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-115414
NC_016832:799764:807901807901808515615Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-114411
NC_008253:2198583:220275422027542203368615Escherichia coli 536, complete genomehypothetical protein6e-34144
NC_004431:2444972:245222124522212452835615Escherichia coli CFT073, complete genomehypothetical protein6e-34144