Pre_GI: BLASTP Hits

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Query: NC_011991:65368:81422 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence

Start: 81422, End: 82090, Length: 669

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014217:2987450:299994429999443000675732Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, GntR family3e-1272
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family2e-1169.7
NC_011894:5056901:509886250988625099566705Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family2e-1065.9
NC_013740:2218215:222773122277312228360630Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, GntR family5e-0961.2
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator1e-0860.1
NC_008392:666000:681288681288681968681Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, GntR family2e-0859.3
NC_010511:6169468:619195061919506192657708Methylobacterium sp. 4-46 chromosome, complete genome2e-0859.3
NC_009720:583060:586317586317586994678Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator4e-0858.2
NC_012587:3177583:317681031768103177586777Rhizobium sp. NGR234, complete genomeputative transcriptional regulator, GntR family4e-0858.2
NC_014639:1:256072560726266660Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein5e-0858.2
CP002207:1:256072560726266660Bacillus atrophaeus 1942, complete genomehypothetical protein5e-0858.2
NC_014650:2097900:211502621150262115742717Geobacillus sp. Y4.1MC1 chromosome, complete genomeGntR family transcriptional regulator9e-0857
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator2e-0756.2
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family2e-0756.2
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator5e-0754.7
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family6e-0754.3
NC_014334:37040:521305213052822693Lactobacillus casei str. Zhang chromosome, complete genometranscriptional regulator8e-0753.9
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family9e-0753.5
NC_014119:977136:993862993862994566705Burkholderia sp. CCGE1002 chromosome chromosome 3, completetranscriptional regulator, GntR family1e-0653.5
NC_015379:4426827:444373244437324444415684Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, GntR family1e-0653.1
NC_014098:2332938:234278423427842343536753Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family4e-0651.6
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family5e-0651.2