Pre_GI: BLASTP Hits

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Query: NC_011991:65368:69985 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence

Start: 69985, End: 71127, Length: 1143

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013422:1732677:1749144174914417503371194Halothiobacillus neapolitanus c2, complete genomeTraB family protein9e-44177
NC_015850:110364:1122591122591137581500Acidithiobacillus caldus SM-1 chromosome, complete genomeTraB5e-27122
NC_011206:262844:2628442628442642021359Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTraB family protein4e-24112
NC_015942:1920693:1928149192814919293451197Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTraB family protein2e-20100