Pre_GI: BLASTP Hits

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Query: NC_011991:65368:69435 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence

Start: 69435, End: 69968, Length: 534

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015221:12389:337623376234301540Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequenceconjugative transfer signal peptidase TraF1e-1582.4
NC_013422:1732677:175254817525481753081534Halothiobacillus neapolitanus c2, complete genomePeptidase S26, conserved region5e-1580.5
NC_006371:1743982:176795617679561768483528Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical conjugal transfer protein TraF8e-1579.7
NC_015381:2859000:289326828932682893870603Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein6e-1477
NC_015556:2265940:228680622868062287333528Pseudomonas fulva 12-X chromosome, complete genomePeptidase S26, conserved region2e-1375.1
NC_015186:2908387:291388729138872914426540Acidiphilium multivorum AIU301, complete genomeputative conjugal transfer protein TraF6e-1270.1
NC_016147:1961000:199013719901371990736600Pseudoxanthomonas spadix BD-a59 chromosome, complete genometype IV secretion system protein1e-1065.9
NC_010338:2443765:244452124445212445039519Caulobacter sp. K31, complete genomeType IV secretory pathway protease TraF-like protein3e-1064.7
NC_009668:445134:513800513800514345546Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceconjugal transfer protein precursor4e-1064.3
NC_008752:725189:749121749121749732612Acidovorax avenae subsp. citrulli AAC00-1, complete genomeputative conjugal transfer TRAF transmembrane protein7e-1063.5
NC_003295:2787371:280686628068662807465600Ralstonia solanacearum GMI1000, complete genomePROBABLE CONJUGAL TRANSFER TRAF TRANSMEMBRANE PROTEIN7e-1063.2
NC_011365:1135750:116187311618731162415543Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative conjugal transfer protein TraF1e-0963.2
NC_010125:381711:398827398827399456630Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein TraF2e-0962
NC_008686:1472899:147606614760661476608543Paracoccus denitrificans PD1222 chromosome 1, complete sequenceconjugal transfer protein precursor3e-0961.2
NC_007925:3933765:395422639542263954771546Rhodopseudomonas palustris BisB18, complete genomeconjugal transfer protein precursor6e-0960.5
NC_015850:1242010:125457112545711255236666Acidithiobacillus caldus SM-1 chromosome, complete genomeconjugal transfer protein7e-0960.1
NC_009720:622262:655257655257655802546Xanthobacter autotrophicus Py2, complete genomeconjugal transfer protein precursor8e-0959.7
NC_009720:4406991:444132044413204441865546Xanthobacter autotrophicus Py2, complete genomepeptidase S26C conjugative transfer signal peptidase TraF1e-0859.7
NC_016027:2512297:251408825140882514717630Gluconacetobacter xylinus NBRC 3288, complete genomeconjugal transfer protein precursor1e-0859.3
NC_014910:242845:262595262595263194600Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s26, conserved region protein2e-0858.9
NC_014500:842493:867251867251867796546Dickeya dadantii 3937 chromosome, complete genometype IV secretory pathway, protease TraF6e-0857
NC_008781:2655071:266722726672272667751525Polaromonas naphthalenivorans CJ2, complete genomeconserved hypothetical conjugal transfer protein TraF1e-0756.2
NC_014834:872924:894178894178894723546Rhodopseudomonas palustris DX-1 chromosome, complete genomeconjugative transfer signal peptidase TraF3e-0754.7
NC_010170:4800000:482394348239434824533591Bordetella petrii, complete genomeconjugal transfer protein TraF3e-0754.7
NC_010943:1332243:134805613480561348631576Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane anchor conjugal transfer protein2e-0652
NC_017249:3119000:312008131200813120593513Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0651.2
NC_008577:1455000:148007914800791480666588Shewanella sp. ANA-3 chromosome 1, complete sequenceputative conjugal transfer TRAF transmembrane protein7e-0650.1