Pre_GI: BLASTP Hits

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Query: NC_011989:1638261:1645317 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 1645317, End: 1645676, Length: 360

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012724:1308000:131401713140171314403387Burkholderia glumae BGR1 chromosome 1, complete genomePutative helix-turn-helix transcriptional regulator2e-1167.8
NC_007434:1712000:179583317958331796300468Burkholderia pseudomallei 1710b chromosome I, complete sequencegp683e-1270.5
NC_013194:4964000:497159649715964971955360Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetranscriptional regulator, XRE family1e-0858.5
NC_014365:2843126:284639428463942846708315Desulfarculus baarsii DSM 2075 chromosome, complete genometranscriptional regulator, XRE family6e-1476.3
NC_013173:2884887:289565328956532895850198Desulfomicrobium baculatum DSM 4028, complete genome5e-1063.2
NC_015573:1979202:199861019986101999377768Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0649.7
NC_016629:2784000:280659328065932806958366Desulfovibrio africanus str. Walvis Bay chromosome, completehelix-turn-helix domain-containing protein8e-0752.4
NC_011979:646518:664994664994665314321Geobacter sp. FRC-32, complete genometranscriptional regulator, XRE family2e-0650.8
NC_011979:3112911:311657031165703116962393Geobacter sp. FRC-32, complete genometranscriptional regulator, XRE family7e-1579.3
NC_007626:1038214:104274710427471043157411Magnetospirillum magneticum AMB-1, complete genomePredicted transcriptional regulator3e-0650.8
NC_011894:5787990:581630358163035816677375Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, XRE family6e-25112
NC_007498:2087811:208873820887382089112375Pelobacter carbinolicus DSM 2380, complete genomehelix-turn-helix transcriptional regulator4e-1786.7
NC_014217:2760898:278162327816232781994372Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, XRE family2e-2097.8