Pre_GI: BLASTP Hits

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Query: NC_011979:3880488:3894593 Geobacter sp. FRC-32, complete genome

Start: 3894593, End: 3895396, Length: 804

Host Lineage: Geobacter daltonii; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: This organism is able to reduce uranium and may be useful for in situ bioremediation of uranium. An iron(III)-reducing bacterium isolated from the uranium-contaminated subsurface of the U.S. Department of Energy NABIR Field Research Center (FRC), Oak Ridge, Tennessee, USA. Several recent studies have verified using cultivation-independent methods that the Geobacteraceae are predominant in subsurface environments where dissimilatory metal reduction is important to the remediation of uranium and other contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007298:1029841:1049883104988310521232241Dechloromonas aromatica RCB, complete genometype II secretion system protein E:Response regulator receiver:General secretory system II, protein E, N-terminal3e-30132
NC_011979:3880488:3887870388787038902902421Geobacter sp. FRC-32, complete genomeresponse regulator receiver protein1e-28126
NC_011979:3880488:388728238872823887845564Geobacter sp. FRC-32, complete genomeresponse regulator receiver protein2e-25115
NC_004347:2668000:2672082267208226734071326Shewanella oneidensis MR-1, complete genomeresponse regulator5e-25114
NC_008544:55451:7393373933753511419Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceresponse regulator receiver modulated metal dependent phosphohydrolase5e-24111
NC_008062:81338:9611596115975331419Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceresponse regulator receiver modulated metal dependent phosphohydrolase5e-24111
NC_011979:3880488:3892317389231738936271311Geobacter sp. FRC-32, complete genomeresponse regulator receiver modulated metal dependent phosphohydrolase6e-24111
NC_017986:5421000:5432860543286054342301371Pseudomonas putida ND6 chromosome, complete genomeresponse regulator receiver protein8e-23107
NC_009512:3118907:3121914312191431232841371Pseudomonas putida F1, complete genomeresponse regulator receiver protein2e-22105
NC_009437:1481064:1498313149831314993531041Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeresponse regulator receiver protein5e-22104
NC_014721:508000:5253775253775264201044Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeresponse regulator receiver protein8e-22104
NC_015572:2262374:2265555226555522668471293Methylomonas methanica MC09 chromosome, complete genomeresponse regulator receiver protein3e-21102
NC_015572:2262374:226422322642232264777555Methylomonas methanica MC09 chromosome, complete genomeresponse regulator receiver protein4e-21102
NC_008340:2272692:2284341228434122857951455Alkalilimnicola ehrlichei MLHE-1, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family3e-2099.4
NC_014393:3055610:3072471307247130735051035Clostridium cellulovorans 743B chromosome, complete genomeresponse regulator receiver protein4e-2098.6
NC_020291:4246500:4262685426268542637791095Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeresponse regulator receiver protein1e-1997.4
NC_007512:1539095:1539095153909515407051611Pelodictyon luteolum DSM 273, complete genomeputative PAS/PAC sensor protein3e-1995.5
NC_012796:3267569:330382633038263304479654Desulfovibrio magneticus RS-1, complete genomeputative NarL family two-component response regulator6e-1994.7
NC_014721:508000:5241685241685253551188Caldicellulosiruptor kristjanssonii 177R1B chromosome, completesignal transduction protein6e-1994.7
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit2e-1892.8
NC_008312:4795204:4813106481310648166243519Trichodesmium erythraeum IMS101, complete genomeadenylate/guanylate cyclase2e-1892.8
NC_009720:2424975:2443307244330724448001494Xanthobacter autotrophicus Py2, complete genometwo component, sigma54 specific, Fis family transcriptional regulator4e-1892
NC_004347:2668000:2669426266942626714021977Shewanella oneidensis MR-1, complete genomeresponse regulator5e-1788.6
NC_011979:3880488:389363438936343894596963Geobacter sp. FRC-32, complete genomeresponse regulator receiver modulated metal dependent phosphohydrolase2e-1686.3
NC_009437:1481064:1497104149710414982881185Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeresponse regulator receiver protein2e-1685.9
NC_017059:2084500:2085325208532520864791155Rhodospirillum photometricum DSM 122, complete genomeResponse regulator containing a CheY-like receiver domain and an HD-GYP domain4e-1685.1
NC_018012:1326553:1365280136528013674902211Thiocystis violascens DSM 198 chromosome, complete genomediguanylate cyclase2e-1582.8
NC_009656:2663387:2665000266500026663431344Pseudomonas aeruginosa PA7 chromosome, complete genomeresponse regulator3e-1582
NC_008463:2654014:2674712267471226760551344Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative two-component response regulator9e-1580.9
NC_014973:3151701:3154188315418831565092322Geobacter sp. M18 chromosome, complete genomeresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase1e-1480.9
NC_009937:673820:6747756747756762411467Azorhizobium caulinodans ORS 571, complete genomeHoxA protein1e-1480.5
NC_013093:2633000:2633170263317026343181149Actinosynnema mirum DSM 43827, complete genomeresponse regulator receiver protein7e-1477.8
NC_015711:4957053:4982460498246049836171158Myxococcus fulvus HW-1 chromosome, complete genomeA-signal transduction regulator AsgA1e-1377
NC_008607:11663:2020620206215611356Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family1e-1376.6
NC_014393:3055610:3073477307347730746821206Clostridium cellulovorans 743B chromosome, complete genomemetal dependent phosphohydrolase3e-1375.5
NC_011979:1683964:1687718168771816890821365Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-1374.7
NC_007645:3756654:377475337747533775484732Hahella chejuensis KCTC 2396, complete genomeFOG: CheY-like receiver2e-1273.6
NC_011979:3880488:3881874388187438832531380Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family2e-1272.8
NC_013929:6923884:6937307693730769390251719Streptomyces scabiei 87.22 chromosome, complete genomethioredoxin reductase3e-1272.4
NC_017059:2084500:2086479208647920877051227Rhodospirillum photometricum DSM 122, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain4e-1272
NC_016947:4500329:4526419452641945280831665Mycobacterium intracellulare MOTT-02 chromosome, complete genomeresponse regulator receiver modulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase1e-1170.5
NC_008554:4586543:4606428460642846078191392Syntrophobacter fumaroxidans MPOB, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family2e-1169.7
NC_020126:6264651:6270878627087862722811404Myxococcus stipitatus DSM 14675, complete genomeDNA-binding response regulator2e-1169.3
NC_011979:3712845:3723132372313237245051374Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family5e-1168.2
NC_014972:2371647:2373659237365923750561398Desulfobulbus propionicus DSM 2032 chromosome, complete genomeFis family two component sigma54 specific transcriptional regulator9e-1167.4
NC_013440:5543667:5559422555942255605041083Haliangium ochraceum DSM 14365, complete genomeresponse regulator receiver modulated diguanylate cyclase3e-1065.9
NC_011979:4293859:1404914049155991551Geobacter sp. FRC-32, complete genomemulti-sensor signal transduction histidine kinase3e-1065.9
NC_010814:1739706:1766648176664817680181371Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family6e-1064.7
NC_010814:2275199:2307133230713323084941362Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-1064.7
NC_016815:844350:8461738461738475161344Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family9e-1064.3
NC_007498:2475781:2496138249613824976161479Pelobacter carbinolicus DSM 2380, complete genometwo component signal transduction response regulator1e-0963.9
NC_015681:1859674:1877599187759918789931395Thermodesulfatator indicus DSM 15286 chromosome, complete genomeFis family two component sigma-54 specific transcriptional regulator1e-0963.9
NC_015510:3273308:3300320330032033019901671Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeresponse regulator receiver protein1e-0963.9
NC_014844:2828370:2846565284656528477011137Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeresponse regulator receiver1e-0963.9
NC_005824:214500:2260842260842278021719Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130response regulator1e-0963.9
NC_013730:906389:9160169160169174881473Spirosoma linguale DSM 74, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family1e-0963.5
NC_009483:5113729:5121392512139251227921401Geobacter uraniireducens Rf4 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator2e-0962.8
NC_007517:2241104:2277374227737422787231350Geobacter metallireducens GS-15, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family3e-0962.8
NC_010628:675445:6994056994057010691665Nostoc punctiforme PCC 73102, complete genomeresponse regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase3e-0962.4
NC_010814:2394250:2394250239425023956321383Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family4e-0962
NC_011146:2916223:2921792292179229231651374Geobacter bemidjiensis Bem, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family5e-0961.6
NC_016803:198178:1981781981781995811404Desulfovibrio desulfuricans ND132 chromosome, complete genometwo component Fis family sigma54-specific transcriptional regulator6e-0961.2
NC_007759:964000:9817439817439831161374Syntrophus aciditrophicus SB, complete genomeresponse regulator containing sigma 54 interaction domain6e-0961.2
NC_005823:1105524:110901811090181109425408Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130response regulator6e-0961.2
NC_012108:1324885:134062313406231341312690Desulfobacterium autotrophicum HRM2, complete genomesensory histidine kinase6e-0961.2
NC_007517:1561466:1565515156551515668911377Geobacter metallireducens GS-15, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-0961.2
NC_013939:1417750:1417750141775014191231374Deferribacter desulfuricans SSM1, complete genometwo-component system, NtrC family, response regulator8e-0960.8
NC_008095:7139056:7159647715964771610831437Myxococcus xanthus DK 1622, complete genomepilin regulatory protein PilR1e-0860.5
NC_011979:3341099:3366059336605933674381380Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family1e-0860.5
NC_009483:2086021:2087611208761120889901380Geobacter uraniireducens Rf4 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator1e-0860.5
NC_010622:249625:2517062517062530641359Burkholderia phymatum STM815 chromosome 1, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family1e-0860.1
NC_010814:1390817:1412795141279514141831389Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family2e-0860.1
NC_010505:400950:4044484044484058031356Methylobacterium radiotolerans JCM 2831, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family2e-0860.1
NC_002939:1634843:1640718164071816420941377Geobacter sulfurreducens PCA, complete genomesigma-54 dependent DNA-binding response regulator2e-0860.1
NC_006177:2211458:2225941222594122273351395Symbiobacterium thermophilum IAM 14863, complete genomesigma-54-dependent transcriptional regulator2e-0859.7
NC_008011:860000:8617568617568631531398Lawsonia intracellularis PHE/MN1-00, complete genomeResponse regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains3e-0859.3
NC_014355:2210884:2225827222582722272421416Candidatus Nitrospira defluvii, complete genomesigma-54 dependent response regulator FleQ4e-0858.5
NC_018604:838932:8630778630778644171341Brachyspira pilosicoli WesB complete genomeresponse regulatory protein AtoC4e-0858.5
NC_015711:8909256:8922607892260789240311425Myxococcus fulvus HW-1 chromosome, complete genomesigma-54 dependent DNA-binding response regulator7e-0858.2
NC_014355:3248386:3246938324693832483891452Candidatus Nitrospira defluvii, complete genomesigma-54 dependent transcriptional regulator7e-0858.2
NC_015714:542679:5567085567085580841377Treponema paraluiscuniculi Cuniculi A chromosome, complete genomesigma-54 dependent response regulator5e-0858.2
NC_012108:1324885:1338915133891513403061392Desulfobacterium autotrophicum HRM2, complete genomeputative response regulator protein5e-0858.2
NC_010741:546573:5605975605975619731377Treponema pallidum subsp. pallidum SS14, complete genomeresponse regulatory protein5e-0858.2
NC_000919:545141:5591655591655605411377Treponema pallidum subsp. pallidum str. Nichols, complete genomeresponse regulatory protein (atoC)5e-0858.2
NC_016842:546661:5606855606855620611377Treponema pallidum subsp. pertenue str. SamoaD chromosome, completesigma-54 dependent response regulator5e-0858.2
NC_016843:547149:5611735611735625491377Treponema pallidum subsp. pertenue str. Gauthier chromosome,sigma-54 dependent response regulator5e-0858.2
NC_016844:547069:5610935610935624691377Treponema pallidum subsp. pallidum DAL-1 chromosome, completesigma-54 dependent response regulator5e-0858.2
NC_016848:547115:5611395611395625151377Treponema pallidum subsp. pertenue str. CDC2 chromosome, completesigma-54 dependent response regulator5e-0858.2
NC_017268:546376:5604005604005617761377Treponema pallidum subsp. pallidum str. Chicago chromosome,acetoacetate metabolism regulatory protein AtoC5e-0858.2
NC_021508:546592:5606165606165619921377Treponema pallidum subsp. pallidum SS14, complete genomesigma-54 dependent response regulator5e-0858.2
NC_016589:183432:1854541854541867941341Burkholderia sp. YI23 chromosome 1, complete sequencetwo component Fis family sigma54-specific transcriptional regulator1e-0757.4
NC_017030:9465809:947211794721179472674558Corallococcus coralloides DSM 2259 chromosome, complete genomeFis family DNA-binding response regulator1e-0757.4
NC_014311:1309562:1328866132886613301941329Ralstonia solanacearum PSI07 chromosome, complete genometranscriptional response regulator, C4-dicarboxylate transport response regulator1e-0757.4
NC_013892:202778:2027782027782042081431Xenorhabdus bovienii SS-2004 chromosome, complete genomeresponse regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family)1e-0757.4
NC_007626:1091000:1108294110829411093281035Magnetospirillum magneticum AMB-1, complete genomeCheY-like receiver9e-0857.4
NC_015711:4957053:498422449842244985213990Myxococcus fulvus HW-1 chromosome, complete genomeresponse regulator1e-0757
NC_010511:1351000:1376832137683213781901359Methylobacterium sp. 4-46 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator1e-0757
NC_020409:621792:6660326660326674021371Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulatory protein zraR1e-0757
NC_014844:2828370:2848257284825728501791923Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein2e-0756.2
NC_008095:7139056:7152372715237271537961425Myxococcus xanthus DK 1622, complete genomesigma-54 dependent DNA-binding response regulator2e-0756.2
NC_015565:1281397:1281397128139712827611365Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completetwo component, sigma54 specific, Fis family transcriptional regulator2e-0756.2
NC_007626:1091000:110499811049981105993996Magnetospirillum magneticum AMB-1, complete genomeCheY-like receiver2e-0756.2
NC_015185:875324:8855678855678868921326Desulfurobacterium thermolithotrophum DSM 11699 chromosome,two component, sigma54 specific, transcriptional regulator, Fis family3e-0755.8
NC_015732:2880801:290428929042892904705417Spirochaeta caldaria DSM 7334 chromosome, complete genomeresponse regulator receiver protein3e-0755.8
NC_017096:779550:7851687851687865801413Caldisericum exile AZM16c01, complete genomeNtrC family two-component system response regulator4e-0755.5
NC_014355:2210884:2236312223631222373611050Candidatus Nitrospira defluvii, complete genomeputative flagellar biosynthesis protein FliH with response regulator receiver domain4e-0755.5
NC_011080:4177443:4177443417744341788521410Salmonella enterica subsp. enterica serovar Newport str. SL254,nitrogen regulation protein NR4e-0755.5
NC_007510:3340008:3366966336696633683211356Burkholderia sp. 383 chromosome 1, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family6e-0755.1
NC_008609:3672653:3699111369911137005081398Pelobacter propionicus DSM 2379, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family5e-0755.1
NC_015138:322386:3223863223863237741389Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetwo component sigma54 specific transcriptional regulator5e-0755.1
NC_009613:781180:7888217888217899841164Flavobacterium psychrophilum JIP02/86, complete genomesigma-54 dependent two-component system response regulatory protein5e-0755.1
NC_015966:2337833:2370093237009323715231431Rhodothermus marinus SG0.5JP17-172 chromosome, complete genometwo component, sigma54 specific, Fis family transcriptional regulator6e-0754.7
NC_019897:3251639:3253455325345532550831629Thermobacillus composti KWC4 chromosome, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain7e-0754.7
NC_008687:133728:1337281337281350531326Paracoccus denitrificans PD1222 chromosome 2, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family8e-0754.3
NC_015672:788417:8056028056028075241923Flexistipes sinusarabici DSM 4947 chromosome, complete genomemulti-sensor hybrid histidine kinase9e-0754.3
NC_011296:102650:1258441258441272111368Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacetoacetate metabolism regulatory protein AtoC1e-0653.9
NC_012918:2277500:2300001230000123013741374Geobacter sp. M21 chromosome, complete genomeFis family transcriptional regulator1e-0653.9
NC_014032:3330596:3335105333510533366431539Salinibacter ruber M8 chromosome, complete genomenitrogen regulation protein NtrC1e-0653.9
NC_011979:1683964:169188516918851692799915Geobacter sp. FRC-32, complete genomeresponse regulator receiver modulated GAF sensor protein2e-0653.1
NC_015945:218326:2202842202842216121329Muricauda ruestringensis DSM 13258 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator2e-0653.1
NC_020829:5174354:5222565522256552239591395Pseudomonas denitrificans ATCC 13867, complete genometwo-component response regulator2e-0652.8
NC_014972:1982315:1997310199731019986831374Desulfobulbus propionicus DSM 2032 chromosome, complete genomeFis family two component sigma54 specific transcriptional regulator2e-0652.8
NC_017098:840492:857367857367858239873Spirochaeta africana DSM 8902 chromosome, complete genomeresponse regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains3e-0652.4
NC_019907:318077:3371413371413385021362Liberibacter crescens BT-1 chromosome, complete genometwo component response regulator nitrogen assimilation regulatory protein3e-0652.4
NC_012489:652319:6789096789096803991491Gemmatimonas aurantiaca T-27, complete genomeNtrC family two-component response regulator3e-0652.4
NC_015589:814530:8341628341628356461485Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesigma-54 factor interaction domain-containing protein3e-0652.4
NC_013132:1165218:1188122118812211895911470Chitinophaga pinensis DSM 2588, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family3e-0652.4
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase4e-0652
NC_008313:886248:9036189036189047901173Ralstonia eutropha H16 chromosome 1, complete sequenceresponse regulator containing an adenylate cyclase effector domain4e-0652
NC_002939:1021297:1038168103816810395711404Geobacter sulfurreducens PCA, complete genomesigma-54 dependent DNA-binding response regulator5e-0651.6
NC_014314:238043:278609278609279148540Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeresponse regulator receiver protein6e-0651.6
NC_015555:1792242:1793992179399217955991608Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetwo component transcriptional regulator, AraC family7e-0651.2
NC_010424:697187:7118287118287128591032Candidatus Desulforudis audaxviator MP104C, complete genomeresponse regulator receiver modulated metal dependent phosphohydrolase7e-0651.2