Pre_GI: BLASTP Hits

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Query: NC_011961:304158:329666 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 329666, End: 330694, Length: 1029

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011961:891815:897928897928898926999Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencealdolase2e-96352
NC_016604:3137694:3157545315754531585491005Mycobacterium rhodesiae NBB3 chromosome, complete genomedihydrodipicolinate synthase/N-acetylneuraminate lyase6e-71267
NC_009338:686932:696743696743697741999Mycobacterium gilvum PYR-GCK chromosome, complete genomedihydrodipicolinate synthetase9e-70264
NC_009338:603663:615243615243616241999Mycobacterium gilvum PYR-GCK chromosome, complete genomedihydrodipicolinate synthetase9e-70264
NC_008705:1752180:177071517707151771713999Mycobacterium sp. KMS, complete genomedihydrodipicolinate synthetase3e-69262
NC_014814:132404:149193149193150191999Mycobacterium sp. Spyr1 chromosome, complete genomedihydrodipicolinate synthase/N-acetylneuraminate lyase3e-69262
NC_009077:1687304:170487817048781705876999Mycobacterium sp. JLS, complete genomedihydrodipicolinate synthetase3e-69262
NC_008146:1748026:176656217665621767560999Mycobacterium sp. MCS, complete genomedihydrodipicolinate synthetase3e-69262
NC_008726:494769:511503511503512501999Mycobacterium vanbaalenii PYR-1, complete genomedihydrodipicolinate synthetase5e-69261
NC_015563:1951368:196571419657141966676963Delftia sp. Cs1-4 chromosome, complete genomedihydrodipicolinate synthetase3e-67255
NC_016947:1480282:149329414932941494265972Mycobacterium intracellulare MOTT-02 chromosome, complete genomedihydrodipicolinate synthetase1e-63243
NC_009077:4419084:444037644403764441347972Mycobacterium sp. JLS, complete genomedihydrodipicolinate synthetase1e-62240
NC_008781:2611702:2617087261708726181241038Polaromonas naphthalenivorans CJ2, complete genomedihydrodipicolinate synthetase4e-62238
NC_015554:4002952:401066540106654011660996Alteromonas sp. SN2 chromosome, complete genomeDihydrodipicolinate synthetase2e-58226
NC_015563:1951368:198122419812241982222999Delftia sp. Cs1-4 chromosome, complete genomedihydrodipicolinate synthetase2e-58226
NC_014814:132404:1517001517001527581059Mycobacterium sp. Spyr1 chromosome, complete genomedihydrodipicolinate synthase/N-acetylneuraminate lyase1e-48194
NC_009338:686932:6942096942096952341026Mycobacterium gilvum PYR-GCK chromosome, complete genomedihydrodipicolinate synthetase2e-48193
NC_009338:603663:6127096127096137341026Mycobacterium gilvum PYR-GCK chromosome, complete genomedihydrodipicolinate synthetase2e-48193
NC_016604:3137694:3160058316005831611341077Mycobacterium rhodesiae NBB3 chromosome, complete genomedihydrodipicolinate synthase/N-acetylneuraminate lyase6e-48191
NC_008726:494769:5140115140115150361026Mycobacterium vanbaalenii PYR-1, complete genomedihydrodipicolinate synthetase5e-48191
NC_008705:1752180:177328017732801774248969Mycobacterium sp. KMS, complete genomedihydrodipicolinate synthetase2e-45183
NC_008146:1748026:176912717691271770095969Mycobacterium sp. MCS, complete genomedihydrodipicolinate synthetase2e-45183
NC_009077:1687304:170744317074431708411969Mycobacterium sp. JLS, complete genomedihydrodipicolinate synthetase2e-45183
NC_013889:413909:432159432159433037879Thioalkalivibrio sp. K90mix chromosome, complete genomedihydrodipicolinate synthase8e-1271.6
NC_009715:905134:923221923221924114894Campylobacter curvus 525.92 chromosome, complete genomedihydrodipicolinate synthase1e-1170.9
NC_019897:3810000:386199338619933862901909Thermobacillus composti KWC4 chromosome, complete genomedihydrodipicolinate synthase/N-acetylneuraminate lyase2e-1170.1
NC_002939:173833:177446177446178318873Geobacter sulfurreducens PCA, complete genomedihydrodipicolinate synthase5e-1168.9
NC_014926:165312:167716167716168588873Thermovibrio ammonificans HB-1 chromosome, complete genomedihydrodipicolinate synthase6e-1168.6
NC_010804:2206000:222802922280292228934906Burkholderia multivorans ATCC 17616 chromosome 1, completedihydrodipicolinate synthase6e-1168.6
NC_007644:626992:654714654714655658945Moorella thermoacetica ATCC 39073, complete genomeDihydrodipicolinate synthetase2e-1067
NC_015318:249445:270509270509271387879Hippea maritima DSM 10411 chromosome, complete genomedihydrodipicolinate synthase2e-1066.6
NC_018080:4436646:445444544544454455323879Pseudomonas aeruginosa DK2 chromosome, complete genomedihydrodipicolinate synthase4e-1065.9
NC_013939:212331:217959217959218840882Deferribacter desulfuricans SSM1, complete genomedihydrodipicolinate synthase7e-1065.1
NC_017986:4091051:409235640923564093243888Pseudomonas putida ND6 chromosome, complete genomedihydrodipicolinate synthase1e-0964.7
NC_015410:3502099:352728135272813528159879Pseudomonas mendocina NK-01 chromosome, complete genomedihydrodipicolinate synthase1e-0964.3
NC_016830:1645879:164836616483661649244879Pseudomonas fluorescens F113 chromosome, complete genomedihydrodipicolinate synthase1e-0964.3
NC_014935:918855:923888923888924784897Nitratifractor saLSUginis DSM 16511 chromosome, complete genomedihydrodipicolinate synthase2e-0963.5
NC_016789:1495274:151898115189811519895915Corynebacterium diphtheriae PW8 chromosome, complete genomedihydrodipicolinate synthase2e-0963.5
NC_011898:598014:612214612214613095882Clostridium cellulolyticum H10, complete genomedihydrodipicolinate synthase3e-0963.2
NC_009714:534015:534015534015534911897Campylobacter hominis ATCC BAA-381, complete genomedihydrodipicolinate synthase7e-0961.6
NC_016613:2596464:259754425975442598428885Vibrio sp. EJY3 chromosome 1, complete sequencedihydrodipicolinate synthase8e-0961.6
NC_016835:405482:412543412543413433891Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,dihydrodipicolinate synthase/N-acetylneuraminate lyase1e-0861.2
NC_015947:1937341:195131419513141952204891Burkholderia sp. JV3 chromosome, complete genomedihydrodipicolinate synthase1e-0861.2
NC_013943:2610902:262311226231122623984873Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomedihydrodipicolinate synthase1e-0861.2
NC_012969:1442147:144846214484621449346885Methylovorus glucosetrophus SIP3-4 chromosome, complete genomedihydrodipicolinate synthetase2e-0860.5
NC_008268:7576365:758803875880387588931894Rhodococcus sp. RHA1, complete genomedihydrodipicolinate synthase2e-0860.5
NC_016641:2773757:278387627838762784763888Paenibacillus terrae HPL-003 chromosome, complete genomedihydrodipicolinate synthase2e-0860.1
NC_014121:4577324:458207745820774582925849Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completedihydrodipicolinate synthase2e-0860.1
NC_010170:4409683:441051444105144411449936Bordetella petrii, complete genomedihydrodipicolinate synthase2e-0860.1
NC_014541:1414627:143592614359261436804879Ferrimonas balearica DSM 9799 chromosome, complete genomedihydrodipicolinate synthase2e-0860.1
NC_008786:1332041:133390913339091334799891Verminephrobacter eiseniae EF01-2, complete genomedihydrodipicolinate synthase2e-0860.1
NC_016830:3230939:323953232395323240431900Pseudomonas fluorescens F113 chromosome, complete genomedihydrodipicolinate synthase3e-0859.7
NC_014532:2108897:211735121173512118235885Halomonas elongata DSM 2581, complete genomeputative dihydrodipicolinate synthetase3e-0859.7
NC_014532:3596097:362035236203523621236885Halomonas elongata DSM 2581, complete genomeputative dihydrodipicolinate synthetase3e-0859.7
NC_015379:3736500:375271437527143753607894Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative dihydrodipicolinate synthase3e-0859.7
NC_015588:2468207:247732024773202478231912Isoptericola variabilis 225 chromosome, complete genomedihydrodipicolinate synthetase3e-0859.7
NC_000913:272071:281481281481282410930Escherichia coli K12, complete genomeCP4-6 prophage; predicted lyase/synthase4e-0859.3
NC_010473:247429:255585255585256514930Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted lyase/synthase4e-0859.3
AC_000091:273325:281481281481282410930Escherichia coli W3110 DNA, complete genomepredicted lyase/synthase4e-0859.3
NC_006510:1995916:200440720044072005309903Geobacillus kaustophilus HTA426, complete genomedihydrodipicolinate synthase4e-0859.3
NC_014166:1008266:101307710130771013976900Arcobacter nitrofigilis DSM 7299 chromosome, complete genomedihydrodipicolinate synthase5e-0858.9
NC_015677:2715912:274053427405342741379846Ramlibacter tataouinensis TTB310 chromosome, complete genomedihydrodipicolinate synthase6e-0858.5
NC_010501:4379920:439681743968174397695879Pseudomonas putida W619, complete genomedihydrodipicolinate synthase7e-0858.5
NC_014733:1857020:185812418581241858996873Methylovorus sp. MP688 chromosome, complete genomedihydrodipicolinate synthase7e-0858.5
NC_012563:3580000:359683935968393597717879Clostridium botulinum A2 str. Kyoto, complete genomedihydrodipicolinate synthase8e-0858.2
NC_014972:544146:544146544146545027882Desulfobulbus propionicus DSM 2032 chromosome, complete genomedihydrodipicolinate synthase9e-0858.2
NC_015953:5444572:545150554515055452404900Streptomyces sp. SirexAA-E chromosome, complete genomedihydrodipicolinate synthase1e-0757.8
NC_007005:1738500:174134417413441742222879Pseudomonas syringae pv. syringae B728a, complete genomedihydrodipicolinate synthase1e-0757.8
NC_020409:560278:569967569967570848882Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeDihydrodipicolinate synthase2e-0757.4
NC_019977:253895:269973269973270848876Methanomethylovorans hollandica DSM 15978, complete genomedihydrodipicolinate synthase2e-0757
NC_014650:475662:504762504762505679918Geobacillus sp. Y4.1MC1 chromosome, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase2e-0757
NC_014206:1618988:163353416335341634466933Geobacillus sp. C56-T3 chromosome, complete genomedihydrodipicolinate synthetase3e-0756.6
NC_018750:5828000:583719358371935838101909Streptomyces venezuelae ATCC 10712, complete genomeDihydrodipicolinate synthase2e-0756.6
NC_020291:6426704:643244164324416433307867Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomedihydrodipicolinate synthase 22e-0756.6
NC_014841:131308:147348147348148253906Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceDihydrodipicolinate synthase6e-0755.5
NC_014364:815346:822080822080822961882Spirochaeta smaragdinae DSM 11293 chromosome, complete genomedihydrodipicolinate synthetase6e-0755.5
NC_012779:2064582:207126820712682072152885Edwardsiella ictaluri 93-146, complete genomehypothetical protein8e-0755.1
NS_000191:923949:940273940273941148876Uncultured Termite group 1 bacterium phylotype Rs-D17, completedihydrodipicolinate synthase7e-0755.1
NC_020419:923949:940273940273941148876Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completedihydrodipicolinate synthase7e-0755.1
NC_009698:3211131:322797232279723228850879Clostridium botulinum A str. Hall chromosome, complete genomedihydrodipicolinate synthase8e-0754.7
NC_009697:3316000:333086533308653331743879Clostridium botulinum A str. ATCC 19397 chromosome, completedihydrodipicolinate synthase8e-0754.7
NC_009495:3340000:335487633548763355754879Clostridium botulinum A str. ATCC 3502 chromosome, complete genomedihydrodipicolinate synthase8e-0754.7
NC_015573:2463123:250941225094122510296885Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDihydrodipicolinate synthase1e-0654.7
NC_016642:1990684:201192520119252012842918Pseudovibrio sp. FO-BEG1 chromosome, complete genomedihydrodipicolinate synthase1e-0654.3
NC_006350:1084930:108775910877591088655897Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative dihydrodipicolinate synthetase2e-0653.9
NC_016512:679688:697399697399698280882Propionibacterium acnes TypeIA2 P.acn17 chromosome, completedihydrodipicolinate synthase2e-0653.5
NC_016511:678582:698014698014698895882Propionibacterium acnes TypeIA2 P.acn31 chromosome, completedihydrodipicolinate synthase2e-0653.5
NC_014039:708427:724720724720725601882Propionibacterium acnes SK137 chromosome, complete genomedihydrodipicolinate synthase2e-0653.5
NC_015389:1782825:180457818045781805474897Coriobacterium glomerans PW2 chromosome, complete genomedihydrodipicolinate synthetase3e-0653.1
NC_004193:2921103:292882729288272929741915Oceanobacillus iheyensis HTE831, complete genomedihydrodipicolinate synthase3e-0652.8
NC_011894:4013830:403111840311184032017900Methylobacterium nodulans ORS 2060, complete genomedihydrodipicolinate synthetase7e-0652
NC_008148:2231045:226993722699372270821885Rubrobacter xylanophilus DSM 9941, complete genomedihydrodipicolinate synthase6e-0652
NC_015587:278000:292448292448293320873Hydrogenobaculum sp. SHO chromosome, complete genomeDihydrodipicolinate synthase9e-0651.6
NC_015557:278000:292412292412293284873Hydrogenobaculum sp. 3684 chromosome, complete genomedihydrodipicolinate synthase9e-0651.6
NC_020411:278000:292444292444293316873Hydrogenobaculum sp. HO, complete genomedihydrodipicolinate synthase9e-0651.6
NC_002677:1822500:182462718246271825529903Mycobacterium leprae TN, complete genomedihydrodipicolinate synthase1e-0551.2