Pre_GI: BLASTP Hits

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Query: NC_011961:304158:320064 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 320064, End: 320873, Length: 810

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014654:895298:899199899199899951753Halanaerobium sp. 'sapolanicus' chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-26119
NC_009255:1105786:111302611130261113838813Burkholderia vietnamiensis G4 chromosome 2, complete sequencebinding-protein-dependent transport system inner membrane protein2e-21102
NC_006177:835459:854613854613855389777Symbiobacterium thermophilum IAM 14863, complete genomeABC transporter permease protein2e-2099.4
NC_015727:1294532:131015113101511310942792Cupriavidus necator N-1 plasmid BB1p, complete sequencehypothetical protein8e-1994.4
NC_015275:1573916:159206615920661592815750Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit1e-1687
NC_007907:2830574:283883128388312839589759Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1686.7
NC_021066:2197490:219864621986462199437792Raoultella ornithinolytica B6, complete genomealkanesulfonate transporter permease subunit2e-1582.8
NC_015727:1294532:131091413109141311735822Cupriavidus necator N-1 plasmid BB1p, complete sequencebinding-protein-dependent transport system inner membrane protein3e-1582.4
NC_014121:2745097:274625227462522747043792Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter permease subunit5e-1581.6
NC_016023:1839503:184165118416511842409759Bacillus coagulans 36D1 chromosome, complete genomeABC transporter integral membrane protein6e-1581.3
NC_008060:1182378:118355211835521184364813Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component2e-1480.1
NC_008542:1727000:172823717282371729049813Burkholderia cenocepacia HI2424 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component2e-1480.1
NC_010508:1705500:170675717067571707569813Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component2e-1480.1
NC_009439:4734237:474580747458074746637831Pseudomonas mendocina ymp, complete genomebinding-protein-dependent transport systems inner membrane component4e-1479
NC_016830:6499234:649923464992346500016783Pseudomonas fluorescens F113 chromosome, complete genomeprotein SsuC1e-1377
NC_015711:2008578:203112320311232031884762Myxococcus fulvus HW-1 chromosome, complete genomeputative aliphatic sulfonates ABC transporter permease1e-1377
NC_016514:891772:933689933689934516828Enterobacter cloacae EcWSU1 chromosome, complete genomeTaurine transport system permease protein tauC2e-1376.3
NC_014393:4988127:500737950073795008182804Clostridium cellulovorans 743B chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-1375.5
NC_014500:2934232:293423229342322935023792Dickeya dadantii 3937 chromosome, complete genomealkanesulfonates transport system permease4e-1375.1
NC_011757:1246000:128154012815401282421882Methylobacterium chloromethanicum CM4, complete genomebinding-protein-dependent transport systems inner membrane component8e-1374.3
NC_010085:1174917:117535611753561176114759Nitrosopumilus maritimus SCM1, complete genomebinding-protein-dependent transport systems inner membrane component9e-1374.3
NC_009439:4734237:473533947353394736133795Pseudomonas mendocina ymp, complete genomebinding-protein-dependent transport systems inner membrane component2e-1273.2
NC_014640:4193193:421082542108254211676852Achromobacter xylosoxidans A8 chromosome, complete genomebinding-protein-dependent transporter inner membrane component family protein 476e-1271.6
NC_020291:1535402:155407415540741554853780Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative aliphatic sulfonates transport permease protein SsuC8e-1270.9
NC_021182:4186515:419716441971644197994831Clostridium pasteurianum BC1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, permease component8e-1270.9
NC_010001:4703500:470536447053644706224861Clostridium phytofermentans ISDg, complete genomebinding-protein-dependent transport systems inner membrane component1e-1170.5
NC_013421:4714478:4755899475589947575091611Pectobacterium wasabiae WPP163, complete genomebinding-protein-dependent transport systems inner membrane component2e-1169.7
NC_013510:517878:532671532671533492822Thermomonospora curvata DSM 43183, complete genomebinding-protein-dependent transport systems inner membrane component2e-1169.7
NC_012225:345704:354194354194354964771Brachyspira hyodysenteriae WA1, complete genometaurine ABC transporter, permease protein3e-1168.9
NC_007907:1732500:173361217336121734388777Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1168.9
NC_011830:2811441:281144128114412812217777Desulfitobacterium hafniense DCB-2, complete genomebinding-protein-dependent transport systems inner membrane component3e-1168.9
NC_018607:290500:310784310784311554771Brachyspira pilosicoli B2904 chromosome, complete genometaurine ABC transporter permease4e-1168.6
NC_011894:2747491:275117027511702752042873Methylobacterium nodulans ORS 2060, complete genomebinding-protein-dependent transport systems inner membrane component8e-1167.8
NC_008595:2432184:245572724557272456554828Mycobacterium avium 104, complete genomeputative aliphatic sulfonates transport permease protein SsuC1e-1067
NC_019673:9084045:910154591015459102369825Saccharothrix espanaensis DSM 44229 complete genomeABC-type aliphatic sulfonates transporter,permease subunit1e-1067
NC_008686:1439328:145134914513491452080732Paracoccus denitrificans PD1222 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component2e-1066.6
NC_016935:4813916:481600948160094816845837Paenibacillus mucilaginosus 3016 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein3e-1065.5
NC_014221:687537:689918689918690670753Truepera radiovictrix DSM 17093 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-1065.5
NC_012912:2998511:2998511299851130000971587Dickeya zeae Ech1591, complete genomebinding-protein-dependent transport systems inner membrane component5e-1065.1
NC_011145:4628000:465062946506294651366738Anaeromyxobacter sp. K, complete genomebinding-protein-dependent transport systems inner membrane component1e-0963.9
NC_010572:1081236:110506311050631105926864Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter permease protein2e-0963.5
NC_015275:521436:533624533624534400777Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit5e-0962
NC_005945:754517:753768753768754520753Bacillus anthracis str. Sterne, complete genomeABC transporter, permease protein, putative4e-0962
NC_013406:1217385:126795212679521268731780Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-0962
NC_009921:3666898:368591536859153686760846Frankia sp. EAN1pec, complete genomebinding-protein-dependent transport systems inner membrane component5e-0961.6
NC_014171:723155:747020747020747772753Bacillus thuringiensis BMB171 chromosome, complete genomehydroxymethylpyrimidine transport system permease6e-0961.6
NC_011000:2831183:283590528359052836732828Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transmembrane protein of ABC transporter7e-0961.2
NC_007517:1107408:111183511118351112617783Geobacter metallireducens GS-15, complete genomeBinding-protein-dependent transport systems inner membrane component7e-0961.2
NC_014624:2549219:254981725498172550599783Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein9e-0960.8
NC_015259:1512563:152895715289571529790834Polymorphum gilvum SL003B-26A1 chromosome, complete genomeProbable aliphatic sulfonate ABC transporter, permease protein1e-0860.5
NC_018607:921923:955291955291956016726Brachyspira pilosicoli B2904 chromosome, complete genomeABC transporter permease2e-0859.7
NC_014659:4299552:434249543424954343310816Rhodococcus equi 103S, complete genomeABC transporter integral membrane subunit4e-0858.9
NC_013421:1954915:195491519549151955688774Pectobacterium wasabiae WPP163, complete genomebinding-protein-dependent transport systems inner membrane component4e-0858.9
NC_020126:4084114:414145741414574142266810Myxococcus stipitatus DSM 14675, complete genomeputative aliphatic sulfonates ABC transporter permease4e-0858.9
NC_010623:72500:912379123792070834Burkholderia phymatum STM815 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component3e-0858.9
NC_017168:3192817:319474831947483195569822Yersinia pestis A1122 chromosome, complete genomeputative transport system permease5e-0858.5
NC_019908:121178:155028155028155753726Brachyspira pilosicoli P43/6/78 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein5e-0858.5
NC_014330:505412:509012509012509737726Brachyspira pilosicoli 95/1000 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component5e-0858.5
NC_018604:1943561:194284619428461943571726Brachyspira pilosicoli WesB complete genomebinding-protein-dependent transport systems inner membrane component4e-0858.5
NC_020126:4084114:413988041398804140674795Myxococcus stipitatus DSM 14675, complete genomealiphatic sulfonates ABC transporter permease8e-0857.8
NC_014614:86213:913679136792236870Clostridium sticklandii, complete genomeSsuC9e-0857.4
NC_015859:1898693:189869318986931899628936Corynebacterium variabile DSM 44702 chromosome, complete genomeABC transport system permease1e-0757.4
NC_013316:2623199:264151726415172642260744Clostridium difficile R20291, complete genome1e-0757
NC_015136:1301576:132629113262911327148858Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitrate/sulfonate/bicarbonate ABC transporter permease2e-0756.6
NC_014640:4193193:421167342116734212482810Achromobacter xylosoxidans A8 chromosome, complete genomebinding-protein-dependent transporter inner membrane component family protein 483e-0755.8
NC_014733:107394:134470134470135264795Methylovorus sp. MP688 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-0755.5
NC_020211:3398281:342261534226153423382768Serratia marcescens WW4, complete genomeABC transporter4e-0755.5
NC_014931:4985500:499939949993995000169771Variovorax paradoxus EPS chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-0755.5
NC_015565:1163148:116623311662331167036804Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeABC transporter integral membrane protein6e-0755.1
NC_011837:1056888:106393210639321064723792Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-0754.7
NC_014733:107394:133650133650134456807Methylovorus sp. MP688 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component6e-0754.7
NC_013515:550464:553101553101553850750Streptobacillus moniliformis DSM 12112, complete genomebinding-protein-dependent transport systems inner membrane component8e-0754.7
NC_012914:5618000:564387556438755644627753Paenibacillus sp. JDR-2, complete genomebinding-protein-dependent transport systems inner membrane component9e-0754.3
NC_018664:2638102:264387826438782644672795Clostridium acidurici 9a chromosome, complete genomealiphatic sulfonates ABC transporter permease protein SsuC9e-0754.3
NC_011894:3029964:307557230755723076393822Methylobacterium nodulans ORS 2060, complete genomebinding-protein-dependent transport systems inner membrane component9e-0754.3
NC_003030:1510000:154295015429501543702753Clostridium acetobutylicum ATCC 824, complete genomeABC transporter, permease component8e-0754.3
NC_017075:4259460:427775342777534278523771Rubrivivax gelatinosus IL144, complete genomeABC transporter permease1e-0653.9
NC_015138:4666544:468181546818154682738924Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completebinding-protein-dependent transport systems inner membrane component1e-0653.9
NC_011832:1148859:117477911747791175618840Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component2e-0653.1
NC_007952:2812996:283372928337292834592864Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit2e-0653.1
NC_010511:871905:879670879670880491822Methylobacterium sp. 4-46 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein2e-0652.8
NC_013716:1298932:1298932129893213005001569Citrobacter rodentium ICC168, complete genomeABC transporter, permease component3e-0652.4
NC_010474:19256:206672066721506840Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequenceABC-type nitrate/sulfonate/bicarbonate transport system, permease5e-0651.6
NC_021182:4186515:420359942035994204381783Clostridium pasteurianum BC1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, permease component6e-0651.6
NC_016584:1912000:191311419131141913905792Desulfosporosinus orientis DSM 765 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease7e-0651.2
NC_008752:2334511:235697423569742357921948Acidovorax avenae subsp. citrulli AAC00-1, complete genomenitrate ABC transporter, inner membrane subunit9e-0650.8