Pre_GI: BLASTP Hits

Some Help

Query: NC_011961:304158:303190 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 303190, End: 304161, Length: 972

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010320:1585974:1595063159506315962111149Thermoanaerobacter sp. X514 chromosome, complete genomeserine-type D-Ala-D-Ala carboxypeptidase7e-21101
NC_014538:1311500:1318171131817113193191149Thermoanaerobacter sp. X513 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase7e-21101
NC_010321:1177238:1188594118859411897421149Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeserine-type D-Ala-D-Ala carboxypeptidase1e-1997.1
NC_014964:1169925:1180785118078511819331149Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeSerine-type D-Ala-D-Ala carboxypeptidase1e-1997.1
NC_013216:3376186:3377539337753933786601122Desulfotomaculum acetoxidans DSM 771, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase4e-1995.9
NC_010520:1586000:1603617160361716048851269Clostridium botulinum A3 str. Loch Maree, complete genomeD-alanyl-D-alanine carboxypeptidase family protein6e-1995.1
NC_009495:1516000:1530641153064115319151275Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase2e-1893.2
NC_008148:2290806:2311245231124523123991155Rubrobacter xylanophilus DSM 9941, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-1789.7
NC_009921:7249249:7268303726830372697001398Frankia sp. EAN1pec, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase4e-1685.5
NC_014538:1311500:1334252133425213353971146Thermoanaerobacter sp. X513 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase3e-1582.8
NC_011830:2901346:2913821291382129148791059Desulfitobacterium hafniense DCB-2, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-1480.9
NC_013791:1152500:1169125116912511707681644Bacillus pseudofirmus OF4 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase1e-1480.9
NC_020291:1149887:1152794115279411541881395Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeD-alanyl-D-alanine carboxypeptidase3e-1479.7
NC_017271:4058642:4058642405864240598531212Xanthomonas campestris pv. raphani 756C chromosome, completepenicillin-binding protein 65e-1375.5
NC_003902:4111283:4112467411246741136781212Xanthomonas campestris pv. campestris str. ATCC 33913, completepenicillin-binding protein 65e-1375.5
NC_011830:2940500:2945743294574329470141272Desulfitobacterium hafniense DCB-2, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase6e-1375.1
NC_020133:1443934:1443934144393414451811248Mycobacterium liflandii 128FXT, complete genomepenicillin-binding protein DacC7e-1374.7
NC_012947:2898179:2916537291653729177391203Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeD-alanyl-D-alanine carboxypeptidase fraction C1e-1273.9
NC_016593:2370000:2391941239194123931161176Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeD-alanyl-D-alanine carboxypeptidase dacF7e-1271.6
NC_014377:1227850:1236864123686412380361173Thermosediminibacter oceani DSM 16646 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-1170.9
NC_009454:1246393:1263383126338312645611179Pelotomaculum thermopropionicum SI, complete genomeD-alanyl-D-alanine carboxypeptidase1e-1170.9
NC_008322:3758500:377954537795453780501957Shewanella sp. MR-7, complete genomepeptidase S11, D-alanyl-D-alanine carboxypeptidase 12e-1170.5
NC_015589:3085442:3089729308972930909761248Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-1170.1
NC_011083:967260:9827649827649839661203Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,D-alanyl-D-alanine carboxypeptidase DacC3e-1169.3
NC_017046:919249:9347409347409359421203Salmonella enterica subsp. enterica serovar Typhimurium str. 798D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)3e-1169.3
NC_016863:920346:9358389358389370401203Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1D-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_016860:959609:9751019751019763031203Salmonella enterica subsp. enterica serovar Typhimurium strD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_016857:919266:9347589347589359601203Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74D-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_016856:921057:9365499365499377511203Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_016810:919266:9347589347589359601203Salmonella enterica subsp. enterica serovar Typhimurium strD-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)3e-1169.3
NC_003197:920000:9354979354979366991203Salmonella typhimurium LT2, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_011205:944125:9595559595559608351281Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853D-alanyl-D-alanine carboxypeptidase fraction C4e-1169.3
NC_016612:3361802:3361802336180233630041203Klebsiella oxytoca KCTC 1686 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_015687:2145452:2163378216337821644331056Clostridium acetobutylicum DSM 1731 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_003366:2057656:208117420811742082049876Clostridium perfringens str. 13, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_012125:894955:9104489104489116501203Salmonella enterica subsp. enterica serovar Paratyphi C strainD-alanyl-D-alanine carboxypeptidase fraction C3e-1169.3
NC_011294:878896:8943898943898955911203Salmonella enterica subsp. enterica serovar Enteritidis strD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_011274:896802:9122969122969134981203Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91D-alanyl-D-alanine carboxypeptidase fraction C3e-1169.3
NC_011094:973140:9886279886279898291203Salmonella enterica subsp. enterica serovar Schwarzengrund strD-alanyl-D-alanine carboxypeptidase3e-1169.3
NC_011080:924326:9398309398309410321203Salmonella enterica subsp. enterica serovar Newport str. SL254,D-alanyl-D-alanine carboxypeptidase DacC3e-1169.3
NC_006905:946418:9632449632449644461203Salmonella enterica subsp. enterica serovar Choleraesuis strD-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a3e-1169.3
NC_010102:2178594:2181622218162221828241203Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1169.3
NC_016109:116995:133483133483134433951Kitasatospora setae KM-6054, complete genomeputative peptidase S11 family protein4e-1168.9
NC_009348:1064664:1089711108971110909011191Aeromonas salmonicida subsp. salmonicida A449, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase5e-1168.9
NC_016622:527688:5455995455995468461248Azospirillum lipoferum 4B, complete genomeputative D-alanyl-D-alanine carboxypeptidase1e-1067.4
NC_010674:2435241:2458174245817424593641191Clostridium botulinum B str. Eklund 17B, complete genomepenicillin-binding protein DacF2e-1067
NC_016012:561687:5785855785855796791095Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeD-alanyl-D-alanine carboxypeptidase2e-1066.6
NC_019978:416637:4181514181514193321182Halobacteroides halobius DSM 5150, complete genomeD-alanyl-D-alanine carboxypeptidase4e-1065.9
NC_017265:2940539:294237229423722943307936Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Murein-DD-endopeptidase9e-1064.7
NC_004129:4596040:460995346099534610891939Pseudomonas fluorescens Pf-5, complete genomeD-alanyl-D-alanine-endopeptidase1e-0964.3
NC_009512:2238437:224218022421802243106927Pseudomonas putida F1, complete genomepeptidase S11, D-alanyl-D-alanine carboxypeptidase 11e-0964.3
NC_008043:615049:6388996388996400801182Silicibacter sp. TM1040 mega plasmid, complete sequenceSerine-type D-Ala-D-Ala carboxypeptidase1e-0964.3
NC_011773:1277606:1299059129905913003451287Bacillus cereus AH820 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_003210:2879906:289624128962412897059819Listeria monocytogenes EGD-e, complete genomehypothetical protein1e-0964.3
NC_011898:598014:5988835988836001031221Clostridium cellulolyticum H10, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 11e-0963.9
NC_011094:2115750:2115750211575021169221173Salmonella enterica subsp. enterica serovar Schwarzengrund strD-alanyl-D-alanine carboxypeptidase2e-0963.9
NC_013171:1364464:1382623138262313838341212Anaerococcus prevotii DSM 20548, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-0963.5
NC_010102:931055:9511799511799523451167Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0963.5
NC_008322:1186000:1215786121578612169611176Shewanella sp. MR-7, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-0963.2
NC_012667:504534:523666523666524616951Vibrio cholerae MJ-1236 chromosome 2, complete genomeD-alanyl-D-alanine endopeptidase3e-0962.8
NC_009456:383819:402952402952403902951Vibrio cholerae O395 chromosome 1, complete sequenceD-alanyl-D-alanine endopeptidase3e-0962.8
NC_014624:1369642:140322214032221404166945Eubacterium limosum KIST612 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase4e-0962.4
NC_015224:1641819:164932116493211650256936Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,D-alanyl-D-alanine endopeptidase4e-0962.4
NC_008800:3123495:313643231364323137367936Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-alanyl-D-alanine endopeptidase4e-0962.4
NC_009436:2776410:2782563278256327837471185Enterobacter sp. 638, complete genomeD-alanyl-D-alanine carboxypeptidase5e-0962
NC_015061:2770856:2789106278910627903171212Rahnella sp. Y9602 chromosome, complete genomeBeta-lactamase6e-0962
NC_011899:2286884:2303163230316323043291167Halothermothrix orenii H 168, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 17e-0961.6
NC_013364:2612822:2615984261598426171501167Escherichia coli O111:H- str. 11128, complete genomeD-alanyl-D-alanine carboxypeptidase7e-0961.6
NC_012917:1923059:1942993194299319441981206Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeBeta-lactamase7e-0961.6
NC_014654:2180994:2194916219491621960431128Halanaerobium sp. 'sapolanicus' chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase9e-0961.2
NC_015663:4950000:4953749495374949549211173Enterobacter aerogenes KCTC 2190 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase2e-0860.5
NC_014306:3210311:3215746321574632168851140Erwinia billingiae Eb661, complete genomePenicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)2e-0859.7
NC_015381:3457784:3501769350176935030041236Burkholderia gladioli BSR3 chromosome 1, complete sequenceD-alanyl-D-alanine carboxypeptidase3e-0859.7
NC_011985:3380842:3383687338368733848531167Agrobacterium radiobacter K84 chromosome 1, complete genomeD-alanyl-D-alanine carboxypeptidase protein4e-0859.3
NC_016002:1765959:1778355177835517795481194Pseudogulbenkiania sp. NH8B, complete genomeserine-type D-Ala-D-Ala carboxypeptidase3e-0859.3
NC_016616:915755:9173309173309184991170Dechlorosoma suillum PS chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase6e-0858.5
NC_017082:3687638:3708095370809537093091215Bradyrhizobium sp. S23321, complete genomeputative Serine-type D-Ala-D-Ala carboxypeptidase6e-0858.5
NC_015913:624859:6390826390826401761095Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeD-alanyl-D-alanine carboxypeptidase8e-0858.2
NC_015556:130437:161038161038161946909Pseudomonas fulva 12-X chromosome, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 11e-0757.8
NC_014833:2988814:3003329300332930047801452Ruminococcus albus 7 chromosome, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 11e-0757.4
NC_020908:2788852:2809643280964328108421200Octadecabacter arcticus 238, complete genomeD-alanyl-D-alanine carboxypeptidase DacC2e-0757
NC_010674:2435241:245433324543332455202870Clostridium botulinum B str. Eklund 17B, complete genomeD-alanyl-D-alanine carboxypeptidase2e-0756.6
NC_014914:1327245:1331890133189013330591170Taylorella equigenitalis MCE9 chromosome, complete genomeMurein-DD-endopeptidase4e-0755.8
NC_016622:1599681:1625572162557216267621191Azospirillum lipoferum 4B, complete genomeD-alanyl-D-alanine carboxypeptidase5e-0755.5
NC_008150:2785830:2788090278809027892921203Yersinia pestis Antiqua, complete genomeputative penicillin-binding protein 57e-0755.1
NC_009654:3215205:3220132322013232212801149Marinomonas sp. MWYL1, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase4e-0652.8
NC_015684:2033985:2047821204782120490471227Oligotropha carboxidovorans OM5 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase DacC4e-0652.4
NC_011386:2073726:2075472207547220767491278Oligotropha carboxidovorans OM5, complete genomepenicillin-binding protein 65e-0652.4