Pre_GI: BLASTP Hits

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Query: NC_011959:815601:830747 Thermomicrobium roseum DSM 5159, complete genome

Start: 830747, End: 831046, Length: 300

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019940:2931500:293642629364262936689264Thioflavicoccus mobilis 8321 chromosome, complete genome30S ribosomal protein S204e-0856.6
NC_010718:1229355:124678712467871247053267Natranaerobius thermophilus JW/NM-WN-LF, complete genomeSSU ribosomal protein S20P8e-0855.8
NC_011353:12000:252212522125484264Escherichia coli O157:H7 str. EC4115 chromosome, complete genome30S ribosomal protein S204e-0650.4
AP010958:12660:240422404224305264Escherichia coli O103:H2 str. 12009 DNA, complete genome30S ribosomal subunit protein S204e-0650.4
NC_009801:11921:240302403024293264Escherichia coli E24377A, complete genomeribosomal protein S204e-0650.4
NC_002695:12000:252202522025483264Escherichia coli O157:H7 str. Sakai, complete genome30S ribosomal protein S204e-0650.4
NC_010468:3970995:397714439771443977407264Escherichia coli ATCC 8739, complete genomeribosomal protein S204e-0650.4
NC_002655:12000:252212522125484264Escherichia coli O157:H7 EDL933, complete genome30S ribosomal protein S204e-0650.4
NC_011750:12047:290262902629289264Escherichia coli IAI39 chromosome, complete genome30S ribosomal protein S204e-0650.4
CP002516:4081484:408759640875964087859264Escherichia coli KO11, complete genomeribosomal protein S204e-0650.4
NC_011751:12000:251732517325436264Escherichia coli UMN026 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_007384:16500:279812798128244264Shigella sonnei Ss046, complete genome30S ribosomal subunit protein S204e-0650.4
NC_011748:11394:227762277623039264Escherichia coli 55989, complete genome30S ribosomal protein S204e-0650.4
CP002185:11921:240432404324306264Escherichia coli W, complete genome30S ribosomal subunit protein S204e-0650.4
CU928145:11394:227762277623039264Escherichia coli 55989 chromosome, complete genome30S ribosomal subunit protein S204e-0650.4
NC_009800:12162:241112411124374264Escherichia coli HS, complete genomeribosomal protein S204e-0650.4
CU928160:11381:227642276423027264Escherichia coli IAI1 chromosome, complete genome30S ribosomal subunit protein S204e-0650.4
NC_011415:11381:227622276223025264Escherichia coli SE11 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_011741:11381:227642276423027264Escherichia coli IAI1 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_012947:3753375:375857237585723758835264Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete30S ribosomal protein S204e-0650.4
NC_011283:4767269:478964447896444789907264Klebsiella pneumoniae 342 chromosome, complete genome30S ribosomal protein S203e-0650.4
NC_003143:483395:503087503087503350264Yersinia pestis CO92, complete genome30S ribosomal protein S203e-0650.4
NC_006155:713174:730397730397730660264Yersinia pseudotuberculosis IP 32953, complete genome30S ribosomal protein S203e-0650.4
NC_008150:4561633:458132445813244581587264Yersinia pestis Antiqua, complete genome30S ribosomal protein S203e-0650.4
NC_008149:402599:422290422290422553264Yersinia pestis Nepal516, complete genome30S ribosomal protein S203e-0650.4
NC_010102:25893:466254662546810186Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0650.4
NC_009659:2849000:285072128507212850984264Janthinobacterium sp. Marseille chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_016902:4081484:408759640875964087859264Escherichia coli KO11FL chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_016822:15401:272012720127464264Shigella sonnei 53G, complete genome30S ribosomal protein S204e-0650.4
NC_013941:12000:252022520225465264Escherichia coli O55:H7 str. CB9615 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_013364:11382:227572275723020264Escherichia coli O111:H- str. 11128, complete genome30S ribosomal protein S204e-0650.4
NC_013361:11382:227732277323036264Escherichia coli O26:H11 str. 11368 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_013353:12660:240422404224305264Escherichia coli O103:H2 str. 12009, complete genome30S ribosomal protein S204e-0650.4
NC_013008:11938:252212522125484264Escherichia coli O157:H7 str. TW14359 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_012967:12161:248872488725150264Escherichia coli B str. REL606 chromosome, complete genome30S ribosomal protein S204e-0650.4
NC_018080:5192264:521407152140715214346276Pseudomonas aeruginosa DK2 chromosome, complete genome30S ribosomal protein S205e-0649.7
NC_008463:5364428:538512753851275385402276Pseudomonas aeruginosa UCBPP-PA14, complete genomeribosomal protein S205e-0649.7