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Query: NC_011769:2016000:2016554 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

Start: 2016554, End: 2016892, Length: 339

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014365:2843126:284585328458532846197345Desulfarculus baarsii DSM 2075 chromosome, complete genometranscriptional regulator, XRE family8e-2095.9
NC_011770:860944:880514880514880840327Pseudomonas aeruginosa LESB58, complete genomeDNA-binding protein4e-1993.2
NC_013960:979556:996470996470996802333Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein1e-1685.1
NC_016629:2784000:280659328065932806958366Desulfovibrio africanus str. Walvis Bay chromosome, completehelix-turn-helix domain-containing protein2e-1580.9
NC_020209:3262000:326693532669353267261327Pseudomonas poae RE*1-1-14, complete genomeDNA-binding protein5e-1579.7
NC_019940:2432689:243778424377842438128345Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator3e-1373.9
NC_007974:2323436:233315823331582333583426Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, XRE family5e-1063.2
NC_008150:4634695:463845946384594638821363Yersinia pestis Antiqua, complete genomeputative regulator1e-0962
NC_017160:4508000:451645445164544516816363Yersinia pestis D182038 chromosome, complete genomeputative regulator1e-0962
NC_011979:3112911:311657031165703116962393Geobacter sp. FRC-32, complete genometranscriptional regulator, XRE family3e-0857.4
NC_008309:555680:571469571469571864396Haemophilus somnus 129PT, complete genomepossible transcriptional regulator6e-0753.1
NC_014217:2760898:278162327816232781994372Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, XRE family1e-0651.6
NC_011894:5787990:581630358163035816677375Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, XRE family5e-0650.1
NC_007498:2087811:208873820887382089112375Pelobacter carbinolicus DSM 2380, complete genomehelix-turn-helix transcriptional regulator6e-0649.3