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Query: NC_011527:1255998 Coxiella burnetii CbuG_Q212, complete genome

Start: 1255998, End: 1290022, Length: 34025

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii G Q212 was isolated from a case of endocarditis and does not carry a plasmid. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011528:14920001492000152159929600Coxiella burnetii CbuK_Q154, complete genome054050BLASTN svgBLASTP svg
NC_002971:61935561935564709927745Coxiella burnetii RSA 493, complete genome049280BLASTN svgBLASTP svg
NC_010117:70011270011272771927608Coxiella burnetii RSA 331, complete genome048920BLASTN svgBLASTP svg
NC_009727:67061667061669334022725Coxiella burnetii Dugway 7E9-12, complete genome042730BLASTN svgBLASTP svg
NC_020207:2240115*2240115226013620022Enterococcus faecium NRRL B-2354, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_016027:2047954*2047954211021762264Gluconacetobacter xylinus NBRC 3288, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_015186:36502*365025988323382Acidiphilium multivorum AIU301, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_009077:3851203*3851203387313021928Mycobacterium sp. JLS, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_007778:3784104*3784104381456530462Rhodopseudomonas palustris HaA2, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_016024:156000*15600017748221483Candidatus Chloracidobacterium thermophilum B chromosome chromosome1e-1283.8BLASTN svgBLASTP svg
NC_020301:669000*66900071117642177Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_015697:1814128*1814128185559941472Lactobacillus reuteri SD2112 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_009513:618000*61800064445826459Lactobacillus reuteri F275, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_003919:1203405*1203405123359930195Xanthomonas axonopodis pv. citri str. 306, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_002973:72328*723289511822791Listeria monocytogenes str. 4b F2365, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_003212:57061*5706110108744027Listeria innocua Clip11262, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_011757:5693584*5693584571331619733Methylobacterium chloromethanicum CM4, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_015942:1711026*1711026173659925574Acidithiobacillus ferrivorans SS3 chromosome, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_016011:59070*590708009921030Listeria ivanovii subsp. ivanovii PAM 55, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_009667:19348181934818195721622399Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_007929:210088*21008823862428537Lactobacillus salivarius subsp. salivarius UCC118, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007929:473500*47350049963926140Lactobacillus salivarius subsp. salivarius UCC118, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_009712:18223751822375185409931725Candidatus Methanoregula boonei 6A8, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015975:1493636*1493636151659922964Lactobacillus ruminis ATCC 27782 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015975:267994*26799428810120108Lactobacillus ruminis ATCC 27782 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008525:664500*66450068827523776Pediococcus pentosaceus ATCC 25745, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008526:2489196*2489196251110721912Lactobacillus casei ATCC 334, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008526:817628*81762883659918972Lactobacillus casei ATCC 334, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010999:880878*88087890041319536Lactobacillus casei, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013198:813830*81383083545121622Lactobacillus rhamnosus GG, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013199:2536705*2536705255640419700Lactobacillus rhamnosus Lc 705, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013199:811929*81192983409922171Lactobacillus rhamnosus Lc 705, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014334:769205*76920579363824434Lactobacillus casei str. Zhang chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_018691:1864796*1864796190445339658Alcanivorax dieselolei B5 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012526:1576775*1576775160272925955Deinococcus deserti VCD115, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014958:1268559*1268559129322524667Deinococcus maricopensis DSM 21211 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014958:3346500*3346500337418227683Deinococcus maricopensis DSM 21211 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014760:925933*92593395269126759Mycoplasma bovis PG45 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_013595:8553904*8553904857655422651Streptosporangium roseum DSM 43021, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_004193:375416*375416683449308034Oceanobacillus iheyensis HTE831, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007576:1747662*1747662177048822827Lactobacillus sakei subsp. sakei 23K, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007576:435713*43571345815822446Lactobacillus sakei subsp. sakei 23K, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008497:1111891*1111891114836436474Lactobacillus brevis ATCC 367, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015161:162000*16200018601224013Deinococcus proteolyticus MRP chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_004193:241480*24148026554624067Oceanobacillus iheyensis HTE831, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_004193:79588*7958811154731960Oceanobacillus iheyensis HTE831, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_004668:241352*24135226701725666Enterococcus faecalis V583, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_004668:3156247*3156247318179425548Enterococcus faecalis V583, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010674:3674739*3674739372221147473Clostridium botulinum B str. Eklund 17B, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010723:3530000*3530000357960049601Clostridium botulinum E3 str. Alaska E43, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_018704:81733*8173311606034328Amphibacillus xylanus NBRC 15112, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_018704:347948*34794837014822201Amphibacillus xylanus NBRC 15112, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020291:6216000*6216000625247336474Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015259:1512563*1512563153812025558Polymorphum gilvum SL003B-26A1 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012526:300126*30012632859928474Deinococcus deserti VCD115, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011047:443475*44347548738743913Candidatus Phytoplasma mali, complete genome4e-0661.9BLASTN svgBLASTP svg