Query: NC_011368:678291 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,
Start: 678291, End: 697599, Length: 19309
Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_000914:135534 | 135534 | 158585 | 23052 | Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_019973:5989816 | 5989816 | 6010968 | 21153 | Mesorhizobium australicum WSM2073, complete genome | 4e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_015675:6615245 | 6615245 | 6637757 | 22513 | Mesorhizobium opportunistum WSM2075 chromosome, complete genome | 4e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_014923:6060859 | 6060859 | 6079775 | 18917 | Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete | 4e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_011894:4066926 | 4066926 | 4110599 | 43674 | Methylobacterium nodulans ORS 2060, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_004463:2158116 | 2158116 | 2236099 | 77984 | Bradyrhizobium japonicum USDA 110, complete genome | 6e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_012912:4737703 | 4737703 | 4760711 | 23009 | Dickeya zeae Ech1591, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008027:5842740 | 5842740 | 5871005 | 28266 | Pseudomonas entomophila L48, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014323:5051041 | 5051041 | 5076643 | 25603 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008554:3177723* | 3177723 | 3202565 | 24843 | Syntrophobacter fumaroxidans MPOB, complete genome | 9e-09 | 69.9 | BLASTN svg | BLASTP svg |
NC_004757:230541* | 230541 | 252740 | 22200 | Nitrosomonas europaea ATCC 19718, complete genome | 9e-09 | 69.9 | BLASTN svg | BLASTP svg |
NC_015740:4508375 | 4508375 | 4528141 | 19767 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010529:296500 | 296500 | 347239 | 50740 | Cupriavidus taiwanensis plasmid pRALTA, complete sequence | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_004463:1898648 | 1898648 | 1964255 | 65608 | Bradyrhizobium japonicum USDA 110, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007951:4608560* | 4608560 | 4636591 | 28032 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008391:2253188 | 2253188 | 2278099 | 24912 | Burkholderia cepacia AMMD chromosome 2, complete sequence | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010552:293703 | 293703 | 322599 | 28897 | Burkholderia ambifaria MC40-6 chromosome 2, complete sequence | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_018876:2563725* | 2563725 | 2587254 | 23530 | Methanolobus psychrophilus R15 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015589:366296 | 366296 | 392099 | 25804 | Desulfotomaculum ruminis DSM 2154 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003295:199354 | 199354 | 238239 | 38886 | Ralstonia solanacearum GMI1000, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_007511:3080849 | 3080849 | 3099687 | 18839 | Burkholderia sp. 383 chromosome 2, complete sequence | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014973:243000 | 243000 | 262345 | 19346 | Geobacter sp. M18 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015437:816719* | 816719 | 835099 | 18381 | Selenomonas sputigena ATCC 35185 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_015731:402280 | 402280 | 421099 | 18820 | Nitrosomonas sp. Is79A3 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
UCMB5137:3857960 | 3857960 | 3890562 | 32603 | Bacillus atrophaeus UCMB-5137 | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_012881:478042 | 478042 | 499316 | 21275 | Desulfovibrio salexigens DSM 2638, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_011420:3822765* | 3822765 | 3847284 | 24520 | Rhodospirillum centenum SW, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_011059:1896593 | 1896593 | 1928099 | 31507 | Prosthecochloris aestuarii DSM 271, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_007650:420745 | 420745 | 447531 | 26787 | Burkholderia thailandensis E264 chromosome II, complete sequence | 9e-06 | 60 | BLASTN svg | BLASTP svg |