Some Help

Query: NC_011368:678291 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,

Start: 678291, End: 697599, Length: 19309

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_000914:13553413553415858523052Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence1e-26129BLASTN svgBLASTP svg
NC_019973:59898165989816601096821153Mesorhizobium australicum WSM2073, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015675:66152456615245663775722513Mesorhizobium opportunistum WSM2075 chromosome, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_014923:60608596060859607977518917Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete4e-1797.6BLASTN svgBLASTP svg
NC_011894:40669264066926411059943674Methylobacterium nodulans ORS 2060, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_004463:21581162158116223609977984Bradyrhizobium japonicum USDA 110, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008027:58427405842740587100528266Pseudomonas entomophila L48, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014323:50510415051041507664325603Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008554:3177723*3177723320256524843Syntrophobacter fumaroxidans MPOB, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_004757:230541*23054125274022200Nitrosomonas europaea ATCC 19718, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete4e-0867.9BLASTN svgBLASTP svg
NC_010529:29650029650034723950740Cupriavidus taiwanensis plasmid pRALTA, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_004463:18986481898648196425565608Bradyrhizobium japonicum USDA 110, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007951:4608560*4608560463659128032Burkholderia xenovorans LB400 chromosome 1, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_008391:22531882253188227809924912Burkholderia cepacia AMMD chromosome 2, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_010552:29370329370332259928897Burkholderia ambifaria MC40-6 chromosome 2, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_018876:2563725*2563725258725423530Methanolobus psychrophilus R15 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015589:36629636629639209925804Desulfotomaculum ruminis DSM 2154 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003295:19935419935423823938886Ralstonia solanacearum GMI1000, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007511:30808493080849309968718839Burkholderia sp. 383 chromosome 2, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_014973:24300024300026234519346Geobacter sp. M18 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015437:816719*81671983509918381Selenomonas sputigena ATCC 35185 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015731:40228040228042109918820Nitrosomonas sp. Is79A3 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
UCMB5137:38579603857960389056232603Bacillus atrophaeus UCMB-51379e-0660BLASTN svgBLASTP svg
NC_012881:47804247804249931621275Desulfovibrio salexigens DSM 2638, complete genome9e-0660BLASTN svgBLASTP svg
NC_011420:3822765*3822765384728424520Rhodospirillum centenum SW, complete genome9e-0660BLASTN svgBLASTP svg
NC_011059:18965931896593192809931507Prosthecochloris aestuarii DSM 271, complete genome9e-0660BLASTN svgBLASTP svg
NC_007650:42074542074544753126787Burkholderia thailandensis E264 chromosome II, complete sequence9e-0660BLASTN svgBLASTP svg