Pre_GI: BLASTP Hits

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Query: NC_011274:2044000:2054463 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Start: 2054463, End: 2054579, Length: 117

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella gallinarum is the causative agent of Fowl typhoid, a severe systemic disease of poultry. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013716:2139952:2147212214721221484381227Citrobacter rodentium ICC168, complete genomeintegrase2e-1064.3
NC_004431:2185750:2194512219451221957321221Escherichia coli CFT073, complete genomePutative P4-family integrase9e-1062.4
NC_008253:1938975:1947667194766719488871221Escherichia coli 536, complete genomephage-related integrase9e-1062.4
NC_011601:2139188:2168237216823721694721236Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeP4-family integrase1e-0962
NC_004547:1873390:192364019236401923981342Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase (partial)7e-0752.8