Pre_GI: BLASTN Hits

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Query: NC_011205:3942500 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Start: 3942500, End: 3967099, Length: 24600

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013850:109500*10950013209922600Klebsiella variicola At-22 chromosome, complete genome01039BLASTN svgBLASTP svg
NC_008258:3995553*3995553402149425942Shigella flexneri 5 str. 8401, complete genome02119BLASTN svgBLASTP svg
NC_002695:4537000*4537000455962722628Escherichia coli O157:H7 str. Sakai, complete genome02125BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02127BLASTN svgBLASTP svg
NC_004337:3761865*3761865378609924235Shigella flexneri 2a str. 301, complete genome02127BLASTN svgBLASTP svg
NC_004741:3992384*3992384401736124978Shigella flexneri 2a str. 2457T, complete genome02127BLASTN svgBLASTP svg
NC_011750:4307166*4307166433102623861Escherichia coli IAI39 chromosome, complete genome02131BLASTN svgBLASTP svg
NC_002655:4606000*4606000462939223393Escherichia coli O157:H7 EDL933, complete genome02133BLASTN svgBLASTP svg
NC_007606:3784847*3784847380859923753Shigella dysenteriae Sd197, complete genome02147BLASTN svgBLASTP svg
CU928160:3862935*3862935388577322839Escherichia coli IAI1 chromosome, complete genome02149BLASTN svgBLASTP svg
NC_009801:4108179*4108179413170423526Escherichia coli E24377A, complete genome02109BLASTN svgBLASTP svg
NC_010498:4031500*4031500405311121612Escherichia coli SMS-3-5, complete genome02101BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome01850BLASTN svgBLASTP svg
NC_011740:4007000*4007000403180124802Escherichia fergusonii ATCC 35469, complete genome02042BLASTN svgBLASTP svg
NC_008563:40835584083558410710723550Escherichia coli APEC O1, complete genome02076BLASTN svgBLASTP svg
NC_004431:4223232*4223232424609922868Escherichia coli CFT073, complete genome02083BLASTN svgBLASTP svg
NC_007946:4050762*4050762407361822857Escherichia coli UTI89, complete genome02083BLASTN svgBLASTP svg
NC_009800:3821824*3821824384534923526Escherichia coli HS, complete genome02085BLASTN svgBLASTP svg
NC_010468:80000*8000010593725938Escherichia coli ATCC 8739, complete genome02085BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome02091BLASTN svgBLASTP svg
NC_008253:3896704*3896704392023823535Escherichia coli 536, complete genome02099BLASTN svgBLASTP svg
CP002185:3998112*3998112402163723526Escherichia coli W, complete genome02163BLASTN svgBLASTP svg
CP002516:88500*8850011436625867Escherichia coli KO11, complete genome02163BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,023010BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete023010BLASTN svgBLASTP svg
NC_011080:3875320*3875320390054525226Salmonella enterica subsp. enterica serovar Newport str. SL254,023610BLASTN svgBLASTP svg
NC_006511:3690828*3690828371609925272Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC023680BLASTN svgBLASTP svg
NC_006905:3845000*3845000386969524696Salmonella enterica subsp. enterica serovar Choleraesuis str034210BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,044500BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome045940BLASTN svgBLASTP svg
NC_011149:3822000*3822000384676224763Salmonella enterica subsp. enterica serovar Agona str. SL483,045980BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,045980BLASTN svgBLASTP svg
NC_010067:38469623846962387119224231Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete09680BLASTN svgBLASTP svg
NC_009792:46589094658909468286123953Citrobacter koseri ATCC BAA-895, complete genome03939BLASTN svgBLASTP svg
NC_013716:44082014408201443527827078Citrobacter rodentium ICC168, complete genome03029BLASTN svgBLASTP svg
CU928145:4167043*4167043419159624554Escherichia coli 55989 chromosome, complete genome02171BLASTN svgBLASTP svg
NC_007613:3637832*3637832366214824317Shigella boydii Sb227, complete genome02171BLASTN svgBLASTP svg
NC_011748:4167043*4167043419159624554Escherichia coli 55989, complete genome02171BLASTN svgBLASTP svg
AC_000091:3827856*3827856385515527300Escherichia coli W3110 DNA, complete genome02173BLASTN svgBLASTP svg
NC_000913:3786124*3786124381459928476Escherichia coli K12, complete genome02173BLASTN svgBLASTP svg
NC_010473:3883701*3883701391159927899Escherichia coli str. K-12 substr. DH10B, complete genome02173BLASTN svgBLASTP svg
NC_010658:3774110*3774110379937225263Shigella boydii CDC 3083-94, complete genome02179BLASTN svgBLASTP svg
AP010958:4668181*4668181469259924419Escherichia coli O103:H2 str. 12009 DNA, complete genome02194BLASTN svgBLASTP svg
NC_011751:4251296*4251296427504623751Escherichia coli UMN026 chromosome, complete genome02194BLASTN svgBLASTP svg
NC_009648:4359875*4359875438125321379Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-170607BLASTN svgBLASTP svg
NC_013421:4790696*4790696482022829533Pectobacterium wasabiae WPP163, complete genome4e-144519BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-141511BLASTN svgBLASTP svg
NC_013961:73037*7303710749134455Erwinia amylovora, complete genome2e-121444BLASTN svgBLASTP svg
NC_010694:63654*636548609922446Erwinia tasmaniensis, complete genome3e-108400BLASTN svgBLASTP svg
NC_020064:4751097*4751097477659925503Serratia marcescens FGI94, complete genome2e-87331BLASTN svgBLASTP svg
NC_013508:63914639148559921686Edwardsiella tarda EIB202, complete genome1e-76295BLASTN svgBLASTP svg
NC_004460:16188921618892163876819877Vibrio vulnificus CMCP6 chromosome II, complete sequence3e-46194BLASTN svgBLASTP svg
NC_005140:34000034000036232922330Vibrio vulnificus YJ016 chromosome II, complete sequence2e-44188BLASTN svgBLASTP svg
NC_002506:82240182240184494222542Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete7e-41176BLASTN svgBLASTP svg
NC_008700:367949*36794939264724699Shewanella amazonensis SB2B, complete genome6e-32147BLASTN svgBLASTP svg
NC_008577:49074974907497493408326587Shewanella sp. ANA-3 chromosome 1, complete sequence6e-29137BLASTN svgBLASTP svg
NC_009784:25385225385227160217751Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence2e-28135BLASTN svgBLASTP svg
NC_007712:38060003806000383079624797Sodalis glossinidius str. 'morsitans', complete genome2e-28135BLASTN svgBLASTP svg
NC_008321:46318664631866465846026595Shewanella sp. MR-4, complete genome4e-27131BLASTN svgBLASTP svg
NC_013456:21215021215023428822139Vibrio sp. Ex25 chromosome 1, complete genome6e-23117BLASTN svgBLASTP svg
NC_012913:2189862*2189862221535925498Aggregatibacter aphrophilus NJ8700, complete genome3e-21111BLASTN svgBLASTP svg
NC_008577:45335744533574455327719704Shewanella sp. ANA-3 chromosome 1, complete sequence8e-1383.8BLASTN svgBLASTP svg
NC_011186:515214*51521454656031347Vibrio fischeri MJ11 chromosome II, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_007650:29017512901751292799926249Burkholderia thailandensis E264 chromosome II, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence8e-1073.8BLASTN svgBLASTP svg
NC_007912:4661141*4661141468409922959Saccharophagus degradans 2-40, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008322:37353137353139273219202Shewanella sp. MR-7, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014532:3967463*3967463399309925637Halomonas elongata DSM 2581, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_018419:1110000*1110000113209922100Secondary endosymbiont of Ctenarytaina eucalypti chromosome,5e-0867.9BLASTN svgBLASTP svg
NC_013416:386301*38630140838122081Aggregatibacter actinomycetemcomitans D11S-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008260:228475*22847524759919125Alcanivorax borkumensis SK2, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008740:87611587611590015424040Marinobacter aquaeolei VT8, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006351:3159630*3159630318599926370Burkholderia pseudomallei K96243 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_007435:1825741*1825741184876423024Burkholderia pseudomallei 1710b chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008784:1151305*1151305117501923715Burkholderia mallei SAVP1 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008835:14832371483237150346620230Burkholderia mallei NCTC 10229 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009075:3113393*3113393313999926607Burkholderia pseudomallei 668 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009078:3087759*3087759311399926241Burkholderia pseudomallei 1106a chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009079:2339756*2339756236599926244Burkholderia mallei NCTC 10247 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_015666:1623790*1623790166298439195Halopiger xanaduensis SH-6 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006349:2311817*2311817233999928183Burkholderia mallei ATCC 23344 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg